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  5. Ore_g18118

Ore_g18118


Description : calcium sensor *(CML) & original description: none


Gene families : OG0000295 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000295_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g18118

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00127800 CAM3, acam-3,... Calmodulin OS=Solanum lycopersicum 0.03 OrthoFinder output from all 47 species
Aev_g26311 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04606 ACAM-6, CAM6 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Cre01.g051250 CEN2, CEN1, ATCEN2 Dynein 18 kDa light chain, flagellar outer arm... 0.02 OrthoFinder output from all 47 species
GSVIVT01018070001 CML11 Calmodulin-like protein 11 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Nbi_g13233 ACAM-6, CAM6 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc10g081170.2.1 CAM3, acam-3,... Calmodulin-related protein OS=Petunia hybrida... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 103 165
IPR002048 EF_hand_dom 32 91
No external refs found!