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  5. Ore_g17422

Ore_g17422 (SDE1, RDR6, SGS2)


Aliases : SDE1, RDR6, SGS2

Description : ssRNA polymerase *(RDR6) & original description: none


Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g17422

Target Alias Description ECC score Gene Family Method Actions
AT3G49500 SDE1, RDR6, SGS2 RNA-dependent RNA polymerase 6 0.03 OrthoFinder output from all 47 species
Aev_g23974 ATRDRP1, RDR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g39991 ATRDRP1, RDR1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.19G025000.1 ATRDRP1, RDR1,... not classified & original description: pacid=50576328... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020816.45 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g08703 ATRDRP1, RDR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07935 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g19796 ATRDRP1, RDR1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os04g39160.1 SMD1, RDR2,... ssRNA polymerase (RDR2) 0.02 OrthoFinder output from all 47 species
Nbi_g01470 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08538 ATRDRP1, RDR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0046903 secretion IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 414 994
No external refs found!