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  5. Ore_g17372

Ore_g17372


Description : not classified & original description: none


Gene families : OG0004370 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004370_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g17372
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00160870 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AT3G02640 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.05 OrthoFinder output from all 47 species
AT5G16250 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.05 OrthoFinder output from all 47 species
AT5G36710 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.05 OrthoFinder output from all 47 species
AT5G36800 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.05 OrthoFinder output from all 47 species
Aev_g22298 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g32668 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g04668 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g07436 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Aspi01Gene13483.t1 Aspi01Gene13483 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene67581.t1 Aspi01Gene67581 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.28G015700.1 Ceric.28G015700 not classified & original description: pacid=50570153... 0.11 OrthoFinder output from all 47 species
Dcu_g00561 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g05252 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01007183001 No alias No description available 0.06 OrthoFinder output from all 47 species
LOC_Os01g67110.1 LOC_Os01g67110 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os04g41900.1 LOC_Os04g41900 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os05g43140.1 LOC_Os05g43140 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Lfl_g31204 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
MA_488033g0010 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Msp_g04591 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Nbi_g39588 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ppi_g00575 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25154 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!