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  5. Ore_g17338

Ore_g17338


Description : scaffold nucleoporin of nuclear pore complex *(NUP205) & original description: none


Gene families : OG0003848 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003848_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g17338

Target Alias Description ECC score Gene Family Method Actions
Adi_g011594 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.07 OrthoFinder output from all 47 species
Als_g05767 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.02 OrthoFinder output from all 47 species
Aob_g23782 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.02 OrthoFinder output from all 47 species
Azfi_s0222.g058815 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.03 OrthoFinder output from all 47 species
Ceric.36G007000.1 Ceric.36G007000 scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.08 OrthoFinder output from all 47 species
Cre13.g578100 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g01801 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.03 OrthoFinder output from all 47 species
Dcu_g12341 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.1 OrthoFinder output from all 47 species
Dde_g01776 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01015528001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Gb_31636 No alias NUP205 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
LOC_Os02g10790.1 LOC_Os02g10790 NUP205 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Len_g12161 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.02 OrthoFinder output from all 47 species
Lfl_g03521 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.04 OrthoFinder output from all 47 species
MA_10430391g0010 No alias Nuclear pore complex protein NUP205 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10433042g0010 No alias Nuclear pore complex protein NUP205 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_23099g0010 No alias Nuclear pore complex protein NUP205 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Mp6g01090.1 No alias NUP205 scaffold nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Pir_g61394 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.02 OrthoFinder output from all 47 species
Sam_g03960 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g006480.2.1 Solyc12g006480 NUP205 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
Spa_g06176 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.02 OrthoFinder output from all 47 species
Tin_g04761 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.02 OrthoFinder output from all 47 species
Zm00001e014006_P001 Zm00001e014006 NUP205 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR021827 Nup186/Nup192/Nup205 20 1626
No external refs found!