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  5. Ore_g16499

Ore_g16499 (PAT1)


Aliases : PAT1

Description : GRAS-type transcription factor & original description: none


Gene families : OG0000550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000550_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g16499
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AT1G50600 SCL5 scarecrow-like 5 0.02 OrthoFinder output from all 47 species
Aob_g14312 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene13768.t1 PAT1, Aspi01Gene13768 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031398 SCL21 GRAS-type transcription factor & original description: CDS=1-1998 0.04 OrthoFinder output from all 47 species
Ehy_g02859 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g45947 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g10472 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11365 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11761 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g24150 SCL13 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55042 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g035620.3.1 PAT1, Solyc06g035620 transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
Solyc07g065270.1.1 PAT1, Solyc07g065270 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 303 669
No external refs found!