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  5. Ore_g16116

Ore_g16116


Description : scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex & original description: none


Gene families : OG0002046 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002046_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g16116
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00133350 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.07 OrthoFinder output from all 47 species
AT1G02080 No alias transcription regulators 0.08 OrthoFinder output from all 47 species
Adi_g055874 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Aev_g11138 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Ala_g12815 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Als_g17486 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Aob_g22134 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.07 OrthoFinder output from all 47 species
Aop_g06241 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.08 OrthoFinder output from all 47 species
Azfi_s0065.g035985 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Cba_g12926 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Ceric.34G056500.1 Ceric.34G056500 scaffold component *(NOT1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000767.19 No alias RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
Cre14.g632950 No alias RNA processing.RNA decay.deadenylation-dependent... 0.01 OrthoFinder output from all 47 species
Dcu_g02066 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Dde_g01777 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Ehy_g17663 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
GSVIVT01000874001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.06 OrthoFinder output from all 47 species
GSVIVT01018178001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.04 OrthoFinder output from all 47 species
GSVIVT01018721001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.07 OrthoFinder output from all 47 species
Gb_12251 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.09 OrthoFinder output from all 47 species
LOC_Os10g40780.1 LOC_Os10g40780 component NOT1 of mRNA deadenylation CCR4-NOT complex 0.04 OrthoFinder output from all 47 species
Len_g12091 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Lfl_g10188 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.07 OrthoFinder output from all 47 species
MA_100304g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_1121588g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_42843g0010 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.07 OrthoFinder output from all 47 species
Mp3g11860.1 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.05 OrthoFinder output from all 47 species
Pnu_g13312 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Pp3c6_26730V3.1 Pp3c6_26730 transcription regulators 0.01 OrthoFinder output from all 47 species
Ppi_g22265 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0261.g026893 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Sam_g40588 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.08 OrthoFinder output from all 47 species
Smo440060 No alias RNA processing.RNA decay.deadenylation-dependent... 0.08 OrthoFinder output from all 47 species
Solyc01g090780.3.1 Solyc01g090780 component NOT1 of mRNA deadenylation CCR4-NOT complex 0.04 OrthoFinder output from all 47 species
Spa_g42101 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Zm00001e000031_P001 Zm00001e000031 component NOT1 of mRNA deadenylation CCR4-NOT complex 0.07 OrthoFinder output from all 47 species
Zm00001e039114_P001 Zm00001e039114 component NOT1 of mRNA deadenylation CCR4-NOT complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR024557 CNOT1_dom_4 1324 1465
IPR032193 CNOT1_TTP_bind 646 808
IPR032191 CNOT1_CAF1_bind 973 1192
IPR032194 CNOT1_HEAT 472 611
IPR007196 CCR4-Not_Not1_C 2064 2430
No external refs found!