Ore_g16105 (ATLIG1, LIG1)

Aliases : ATLIG1, LIG1

Description : EC_6.5 ligase forming phosphoric ester bond & original description: none

Gene families : OG0001904 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001904_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g16105

Target	Alias	Description	ECC score	Gene Family Method
Adi_g057159	ATLIG1, LIG1	EC_6.5 ligase forming phosphoric ester bond & original...	0.03	OrthoFinder output from all 47 species
Aop_g65805	ATLIG1, LIG1	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species
Ceric.28G053000.1	ATLIG1, LIG1,...	EC_6.5 ligase forming phosphoric ester bond & original...	0.03	OrthoFinder output from all 47 species
Cre06.g278177	AtLIG6, LIG6	DNA ligase 6 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Ehy_g20815	ATLIG1, LIG1	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01030942001	AtLIG6, LIG6	DNA damage response.DNA repair mechanisms.nonhomologous...	0.03	OrthoFinder output from all 47 species
LOC_Os01g49180.1	AtLIG6, LIG6,...	DNA ligase (LIG6)	0.04	OrthoFinder output from all 47 species
MA_10044742g0010	ATLIG1, LIG1	DNA ligase 1 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Mp1g15320.1	ATLIG1, LIG1	DNA replication DNA ligase (LIG1). DNA ligase (LIG1)	0.02	OrthoFinder output from all 47 species
Mp2g23970.1	AtLIG6, LIG6	DNA ligase (LIG6)	0.02	OrthoFinder output from all 47 species
Msp_g15129	ATLIG1, LIG1	EC_6.5 ligase forming phosphoric ester bond & original...	0.03	OrthoFinder output from all 47 species
Nbi_g19800	ATLIG1, LIG1	EC_6.5 ligase forming phosphoric ester bond & original...	0.04	OrthoFinder output from all 47 species
Ppi_g48441	AtLIG6, LIG6	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0162.g023987	AtLIG6, LIG6	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species
Solyc02g091120.4.1	AtLIG6, LIG6,...	DNA ligase 6 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Solyc11g066370.2.1	ATLIG1, LIG1,...	DNA replication DNA ligase (LIG1). DNA ligase (LIG1)	0.04	OrthoFinder output from all 47 species
Tin_g07751	ATLIG1, LIG1	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species
Tin_g13706	AtLIG6, LIG6	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species
Zm00001e020139_P002	AtLIG6, LIG6,...	DNA ligase (LIG6)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003909	DNA ligase activity	None	Extended
MF	GO:0003910	DNA ligase (ATP) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006310	DNA recombination	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012310	DNA_ligase_ATP-dep_cent	356	560
IPR012309	DNA_ligase_ATP-dep_C	587	696
IPR012308	DNA_ligase_ATP-dep_N	114	290

External Links

No external refs found!

Ore_g16105 (ATLIG1, LIG1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation