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  5. AMTR_s00092p00090110

AMTR_s00092p00090110 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00092.50

Description : RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA chromatin transcription factor


Gene families : OG_01_0003954 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003954_tree ,
OG_02_0003386 (LandPlants) Phylogenetic Tree(s): OG_02_0003386_tree ,
OG_03_0003593 (SeedPlants) Phylogenetic Tree(s): OG_03_0003593_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00092p00090110
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AT1G48920 PARL1, ATNUC-L1, NUC-L1 nucleolin like 1 0.09 Archaeplastida
Cre06.g275100 No alias RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.07 Archaeplastida
GSVIVT01012042001 No alias RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.05 Archaeplastida
Gb_32672 No alias rDNA chromatin transcription factor (NCL) 0.02 Archaeplastida
LOC_Os04g52960.1 No alias rDNA chromatin transcription factor (NCL) 0.04 Archaeplastida
LOC_Os08g09350.1 No alias rDNA chromatin transcription factor (NCL) 0.06 Archaeplastida
MA_10433238g0010 No alias rDNA chromatin transcription factor (NCL) 0.04 Archaeplastida
MA_11380g0030 No alias rDNA chromatin transcription factor (NCL) 0.07 Archaeplastida
Pp3c12_23930V3.1 No alias nucleolin like 2 0.05 Archaeplastida
Pp3c1_36300V3.1 No alias nucleolin like 2 0.03 Archaeplastida
Pp3c4_1560V3.1 No alias nucleolin like 2 0.04 Archaeplastida
Smo234317 No alias RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.06 Archaeplastida
Solyc02g014310.4.1 No alias rDNA chromatin transcription factor (NCL) 0.11 Archaeplastida
Zm00001e004617_P003 No alias rDNA chromatin transcription factor (NCL) 0.04 Archaeplastida
Zm00001e021609_P004 No alias rDNA chromatin transcription factor (NCL) 0.08 Archaeplastida
AT1G48920 PARL1, ATNUC-L1, NUC-L1 nucleolin like 1 0.06 LandPlants
GSVIVT01012042001 No alias RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.04 LandPlants
Gb_32672 No alias rDNA chromatin transcription factor (NCL) 0.02 LandPlants
LOC_Os04g52960.1 No alias rDNA chromatin transcription factor (NCL) 0.03 LandPlants
LOC_Os08g09350.1 No alias rDNA chromatin transcription factor (NCL) 0.05 LandPlants
MA_10433238g0010 No alias rDNA chromatin transcription factor (NCL) 0.04 LandPlants
MA_11380g0030 No alias rDNA chromatin transcription factor (NCL) 0.06 LandPlants
Pp3c12_23930V3.1 No alias nucleolin like 2 0.01 LandPlants
Pp3c1_36300V3.1 No alias nucleolin like 2 0.02 LandPlants
Pp3c4_1560V3.1 No alias nucleolin like 2 0.03 LandPlants
Smo234317 No alias RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.05 LandPlants
Solyc02g014310.4.1 No alias rDNA chromatin transcription factor (NCL) 0.11 LandPlants
Zm00001e004617_P003 No alias rDNA chromatin transcription factor (NCL) 0.02 LandPlants
Zm00001e021609_P004 No alias rDNA chromatin transcription factor (NCL) 0.05 LandPlants
AT1G48920 PARL1, ATNUC-L1, NUC-L1 nucleolin like 1 0.06 SeedPlants
GSVIVT01012042001 No alias RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.04 SeedPlants
Gb_32672 No alias rDNA chromatin transcription factor (NCL) 0.02 SeedPlants
LOC_Os04g52960.1 No alias rDNA chromatin transcription factor (NCL) 0.03 SeedPlants
LOC_Os08g09350.1 No alias rDNA chromatin transcription factor (NCL) 0.05 SeedPlants
MA_10433238g0010 No alias rDNA chromatin transcription factor (NCL) 0.04 SeedPlants
MA_11380g0030 No alias rDNA chromatin transcription factor (NCL) 0.06 SeedPlants
Solyc02g014310.4.1 No alias rDNA chromatin transcription factor (NCL) 0.11 SeedPlants
Zm00001e004617_P003 No alias rDNA chromatin transcription factor (NCL) 0.02 SeedPlants
Zm00001e021609_P004 No alias rDNA chromatin transcription factor (NCL) 0.05 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 405 473
IPR000504 RRM_dom 520 577
No external refs found!