Zm00001d036301 (GRMZM2G433801)


Aliases : GRMZM2G433801

Description : 27.1.1 RNA.processing.splicing a genetic locus involved in embryogenesis. Mutations in this locus result in an abnormal suspensor and embryo lethality. ABNORMAL SUSPENSOR 2 (SUS2)


Gene families : OG_01_0005178 (Gene family) Phylogenetic Tree(s): OG0005178_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d036301
Cluster HCCA cluster: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
AT1G80070 EMB33, SUS2,... Pre-mRNA-processing-splicing factor 0.07 Gene family
Cpa|evm.model.tig00000093.137 No alias 27.1.1 RNA.processing.splicing a genetic locus involved... 0.03 Gene family
GSVIVT01017346001 No alias 27.1.1 RNA.processing.splicing a genetic locus involved... 0.06 Gene family
LOC_Os05g07050 Os05g0163200,... 27.1.1 RNA.processing.splicing a genetic locus involved... 0.03 Gene family
MA_7388g0020 No alias 27.1.1 RNA.processing.splicing a genetic locus involved... 0.04 Gene family
Smo173603 PACid_15416251 27.1.1 RNA.processing.splicing a genetic locus involved... 0.05 Gene family
Solyc07g008880.3.1 Solyc07g008880.3 27.1.1 RNA.processing.splicing a genetic locus involved... 0.09 Gene family

Type GO Term Name Evidence Source
MF GO:0030623 U5 snRNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR021983 PRP8_domainIV 1617 1846
IPR000555 JAMM/MPN+_dom 1958 2056
IPR012591 PRO8NT 1 63
IPR019580 Prp8_U6-snRNA-bd 1299 1457
IPR012592 PROCN 252 657
IPR019582 RRM_spliceosomal_PrP8 842 932
IPR012984 PROCT 2069 2189
IPR019581 Prp8_U5-snRNA-bd 1067 1200
No external refs found!