AMTR_s00092p00083700 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00092.44

Description : Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana


Gene families : OG_01_0008036 (Archaeplastida) Phylogenetic Tree(s): OG_01_0008036_tree ,
OG_02_0007862 (LandPlants) Phylogenetic Tree(s): OG_02_0007862_tree ,
OG_03_0010058 (SeedPlants) Phylogenetic Tree(s): OG_03_0010058_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00092p00083700
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01020809001 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.04 Archaeplastida
Gb_12237 No alias plastidial RNA processing factor (PPR287) 0.04 Archaeplastida
LOC_Os08g09270.1 No alias plastidial RNA processing factor (PPR287) 0.03 Archaeplastida
Pp3c26_11100V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
Smo448320 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.02 Archaeplastida
Solyc07g043600.4.1 No alias plastidial RNA processing factor (PPR287) 0.02 Archaeplastida
AT3G59040 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
GSVIVT01020809001 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.04 LandPlants
Gb_12237 No alias plastidial RNA processing factor (PPR287) 0.02 LandPlants
LOC_Os08g09270.1 No alias plastidial RNA processing factor (PPR287) 0.03 LandPlants
Pp3c26_11100V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 LandPlants
Smo448320 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.02 LandPlants
Solyc07g043600.4.1 No alias plastidial RNA processing factor (PPR287) 0.02 LandPlants
AT3G59040 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 SeedPlants
GSVIVT01020809001 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.02 SeedPlants
Gb_12237 No alias plastidial RNA processing factor (PPR287) 0.02 SeedPlants
LOC_Os08g09270.1 No alias plastidial RNA processing factor (PPR287) 0.02 SeedPlants
Solyc07g043600.4.1 No alias plastidial RNA processing factor (PPR287) 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 171 216
IPR002885 Pentatricopeptide_repeat 379 428
IPR002885 Pentatricopeptide_repeat 245 287
IPR002885 Pentatricopeptide_repeat 309 357
IPR002885 Pentatricopeptide_repeat 141 166
No external refs found!