Ore_g12671


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g12671
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00080380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g59720,... 0.03 OrthoFinder output from all 47 species
AMTR_s00057p00137550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g36980,... 0.03 OrthoFinder output from all 47 species
AMTR_s00071p00124250 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.03 OrthoFinder output from all 47 species
AT1G74400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G11460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g035616 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g054888 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g36018 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07701 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16773 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g23933 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g30691 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g36540 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g38819 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04438 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05671 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19189 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g27639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54594 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g57762 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06005 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27882 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g30099 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g03536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28486 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28650 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene05366.t1 VAC1, ECB2,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene19894.t1 Aspi01Gene19894 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene20498.t1 CRR2, Aspi01Gene20498 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene27883.t1 Aspi01Gene27883 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31776.t1 Aspi01Gene31776 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene35394.t1 Aspi01Gene35394 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene63595.t1 EMB2261, Aspi01Gene63595 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66052.t1 Aspi01Gene66052 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0002.g001303 No alias not classified & original description: CDS=1-2292 0.04 OrthoFinder output from all 47 species
Azfi_s0004.g008403 EMB2758 not classified & original description: CDS=1-1560 0.02 OrthoFinder output from all 47 species
Azfi_s0004.g008511 No alias not classified & original description: CDS=1-792 0.06 OrthoFinder output from all 47 species
Azfi_s0008.g011342 No alias not classified & original description: CDS=1-1953 0.02 OrthoFinder output from all 47 species
Azfi_s0008.g011443 No alias not classified & original description: CDS=1-2145 0.05 OrthoFinder output from all 47 species
Azfi_s0008.g011584 No alias not classified & original description: CDS=1-2754 0.03 OrthoFinder output from all 47 species
Azfi_s0009.g011901 No alias not classified & original description: CDS=1-1638 0.03 OrthoFinder output from all 47 species
Azfi_s0069.g036571 No alias not classified & original description: CDS=1-1638 0.02 OrthoFinder output from all 47 species
Azfi_s0081.g038550 EMB2758 not classified & original description: CDS=1-1851 0.05 OrthoFinder output from all 47 species
Azfi_s0277.g061496 No alias not classified & original description: CDS=1-2121 0.03 OrthoFinder output from all 47 species
Azfi_s0345.g065835 No alias not classified & original description: CDS=1-1926 0.03 OrthoFinder output from all 47 species
Azfi_s0349.g066524 No alias ssDNA-binding protein *(OSB) & original description: CDS=117-392 0.04 OrthoFinder output from all 47 species
Azfi_s0551.g076599 No alias not classified & original description: CDS=1-1686 0.03 OrthoFinder output from all 47 species
Azfi_s1334.g101644 No alias not classified & original description: CDS=1-3543 0.06 OrthoFinder output from all 47 species
Azfi_s4317.g118724 No alias not classified & original description: CDS=1-465 0.06 OrthoFinder output from all 47 species
Cba_g05902 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g15519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19562 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g31665 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g45872 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75784 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75809 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G069300.1 OTP86, Ceric.09G069300 not classified & original description: pacid=50588354... 0.04 OrthoFinder output from all 47 species
Ceric.1Z131300.1 CRR22, Ceric.1Z131300 not classified & original description: pacid=50639026... 0.03 OrthoFinder output from all 47 species
Dac_g03777 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g05441 RARE1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g21997 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g30474 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g35673 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g35986 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g43531 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07066 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08166 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08937 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08943 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26238 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g30253 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g38473 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g48025 MEF21 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g48207 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g49128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03998 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16060 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17418 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21990 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22625 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g28912 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g30825 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51448 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g23295 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01033906001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_36775 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os01g28570.1 LOC_Os01g28570 Pentatricopeptide repeat-containing protein At3g49710... 0.05 OrthoFinder output from all 47 species
LOC_Os01g51790.1 LOC_Os01g51790 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os03g52475.1 LOC_Os03g52475 Pentatricopeptide repeat-containing protein At3g28660... 0.03 OrthoFinder output from all 47 species
LOC_Os04g58980.1 LOC_Os04g58980 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os07g31000.1 LOC_Os07g31000 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os08g05750.1 LOC_Os08g05750 Pentatricopeptide repeat-containing protein At4g16835,... 0.02 OrthoFinder output from all 47 species
Len_g04264 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g19583 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g19713 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g25855 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26297 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54967 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04163 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06204 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06716 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07081 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07338 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07397 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g17373 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g25864 OSB4 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g32907 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g03575 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g10059 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g17686 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17711 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g23160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g23222 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g31719 LOI1, MEF11 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g31919 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g32056 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41129 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06656 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06939 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08010 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g13501 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15565 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15698 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g15700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23628 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g24679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25468 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27549 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g27720 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27960 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g32359 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01285 OTP82 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g09916 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g12341 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g12555 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g13275 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g24617 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g02568 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13442 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g37149 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g42136 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57535 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57986 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63864 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63890 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g23595 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30213 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c17_4890V3.1 Pp3c17_4890 mitochondrial editing factor 22 0.02 OrthoFinder output from all 47 species
Ppi_g04704 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g05328 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g05910 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07527 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14452 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g28712 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30507 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30938 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g32279 MEF21 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g46621 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56969 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57919 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015555 No alias not classified & original description: CDS=1-2496 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019756 No alias not classified & original description: CDS=1-2544 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0345.g027287 No alias not classified & original description: CDS=1-2001 0.02 OrthoFinder output from all 47 species
Sam_g01375 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g03885 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo107480 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Solyc02g088650.1.1 Solyc02g088650 Pentatricopeptide repeat-containing protein At5g39350... 0.05 OrthoFinder output from all 47 species
Spa_g51341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54422 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55549 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g56457 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g03506 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g13333 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15029 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30039 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g35298 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013166_P001 Zm00001e013166 Pentatricopeptide repeat-containing protein At4g14820... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004549 tRNA-specific ribonuclease activity IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP HCCA
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP HCCA
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046490 isopentenyl diphosphate metabolic process IEP HCCA
BP GO:0050992 dimethylallyl diphosphate biosynthetic process IEP HCCA
BP GO:0050993 dimethylallyl diphosphate metabolic process IEP HCCA
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 68 95
IPR002885 Pentatricopeptide_repeat 1 47
No external refs found!