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  5. Ore_g10706

Ore_g10706 (CRM3, HCF152)


Aliases : CRM3, HCF152

Description : plastidial transcript stability factor *(HCF152) & original description: none


Gene families : OG0001501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g10706
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AT3G09650 CRM3, HCF152 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Aev_g20509 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.04 OrthoFinder output from all 47 species
Cba_g11157 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.05 OrthoFinder output from all 47 species
Dac_g16736 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.03 OrthoFinder output from all 47 species
Dcu_g02987 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g02920 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.04 OrthoFinder output from all 47 species
LOC_Os12g01210.1 CRM3, HCF152,... HCF152 plastidial RNA transcript stability factor 0.03 OrthoFinder output from all 47 species
Len_g11883 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.03 OrthoFinder output from all 47 species
Lfl_g03303 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.03 OrthoFinder output from all 47 species
MA_90791g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.01 OrthoFinder output from all 47 species
Nbi_g15156 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.04 OrthoFinder output from all 47 species
Pnu_g08944 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.02 OrthoFinder output from all 47 species
Tin_g06672 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 395 420
IPR002885 Pentatricopeptide_repeat 537 565
IPR002885 Pentatricopeptide_repeat 432 461
IPR002885 Pentatricopeptide_repeat 465 511
IPR002885 Pentatricopeptide_repeat 571 619
IPR002885 Pentatricopeptide_repeat 227 272
No external refs found!