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  5. Ore_g10464

Ore_g10464 (RNPS1, SR45)


Aliases : RNPS1, SR45

Description : component *(RNPS1) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0002814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002814_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g10464
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00150630 RNPS1, SR45,... RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder output from all 47 species
Adi_g015327 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g113272 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ceric.19G041100.1 RNPS1, SR45,... component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ehy_g18862 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Gb_20779 RNPS1, SR45 component RNPS1 of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
Len_g07514 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
MA_10356517g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Pir_g15172 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Sam_g14861 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36997 No alias component *(RNPS1) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Solyc10g005590.4.1 RNPS1, SR45,... component RNPS1 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Tin_g01053 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Zm00001e018566_P001 RNPS1, SR45,... component RNPS1 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Zm00001e028289_P001 RNPS1, SR45,... component RNPS1 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0031491 nucleosome binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 87 155
No external refs found!