Aev_g15218 (ATCUL4, CUL4)

Aliases : ATCUL4, CUL4

Description : scaffold component *(CUL4) of CUL4-DDB1 ubiquitination complexes & original description: none

Gene families : OG0000920 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000920_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aev_g15218

Target	Alias	Description	ECC score	Gene Family Method
Ala_g06366	ATCUL3A, ATCUL3,...	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.03	OrthoFinder output from all 47 species
Als_g06640	ATCUL4, CUL4	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g06802	ATCUL4, CUL4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g18973	ATCUL4, CUL4	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g09043	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.05	OrthoFinder output from all 47 species
Aop_g07404	ATCUL3A, ATCUL3,...	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.03	OrthoFinder output from all 47 species
Ceric.06G089900.1	ATCUL4, CUL4,...	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000157.110	ATCUL4, CUL4	Cullin-4 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020934.33	CUL3B, ATCUL3B	Protein degradation.peptide tagging.Ubiquitin...	0.01	OrthoFinder output from all 47 species
Cre07.g324050	ATCUL3A, ATCUL3,...	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
Cre12.g516500	ATCUL4, CUL4	Protein degradation.peptide tagging.Ubiquitin...	0.01	OrthoFinder output from all 47 species
Dac_g10487	ATCUL3A, ATCUL3,...	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.03	OrthoFinder output from all 47 species
Dcu_g13417	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.03	OrthoFinder output from all 47 species
Ehy_g02848	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.02	OrthoFinder output from all 47 species
GSVIVT01020008001	ATCUL3A, ATCUL3,...	Cullin-3A OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Len_g07971	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.04	OrthoFinder output from all 47 species
Lfl_g02234	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.04	OrthoFinder output from all 47 species
MA_36374g0010	ATCUL4, CUL4	Cullin-4 OS=Arabidopsis thaliana (sp\|q8lgh4\|cul4_arath : 352.0)	0.05	OrthoFinder output from all 47 species
Mp1g07340.1	ATCUL4, CUL4	scaffold component CUL4 of CUL4-DDB1 ubiquitination...	0.01	OrthoFinder output from all 47 species
Mp4g12190.1	ATCUL3A, ATCUL3,...	scaffold component CUL3 of CUL3-BTB E3 ligase complexes	0.04	OrthoFinder output from all 47 species
Msp_g05342	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.04	OrthoFinder output from all 47 species
Ore_g17472	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.03	OrthoFinder output from all 47 species
Pir_g01368	ATCUL3A, ATCUL3,...	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013899	ATCUL3A, ATCUL3,...	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.03	OrthoFinder output from all 47 species
Sam_g13649	No alias	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.06	OrthoFinder output from all 47 species
Smo172620	ATCUL4, CUL4	Protein degradation.peptide tagging.Ubiquitin...	0.05	OrthoFinder output from all 47 species
Smo98006	ATCUL3A, ATCUL3,...	Protein degradation.peptide tagging.Ubiquitin...	0.05	OrthoFinder output from all 47 species
Solyc02g021470.4.1	ATCUL4, CUL4,...	scaffold component CUL4 of CUL4-DDB1 ubiquitination...	0.02	OrthoFinder output from all 47 species
Tin_g01191	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquiTination...	0.11	OrthoFinder output from all 47 species
Zm00001e005919_P001	ATCUL4, CUL4,...	scaffold component CUL4 of CUL4-DDB1 ubiquitination...	0.05	OrthoFinder output from all 47 species
Zm00001e011908_P001	ATCUL4, CUL4,...	scaffold component CUL4 of CUL4-DDB1 ubiquitination...	0.02	OrthoFinder output from all 47 species
Zm00001e015820_P001	ATCUL3A, ATCUL3,...	scaffold component CUL3 of CUL3-BTB E3 ligase complexes	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
MF	GO:0031625	ubiquitin protein ligase binding	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
MF	GO:0044389	ubiquitin-like protein ligase binding	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0031267	small GTPase binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001373	Cullin_N	126	723
IPR019559	Cullin_neddylation_domain	754	814

External Links

No external refs found!

Aev_g15218 (ATCUL4, CUL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation