AMTR_s00091p00120960 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00091.44

Description : RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX-2 mRNP trafficking complex.CEN centrin component


Gene families : OG_01_0000031 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000031_tree ,
OG_02_0002452 (LandPlants) Phylogenetic Tree(s): OG_02_0002452_tree ,
OG_03_0002735 (SeedPlants) Phylogenetic Tree(s): OG_03_0002735_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00091p00120960
Cluster HCCA: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
AT1G62820 No alias Calcium-binding EF-hand family protein 0.03 Archaeplastida
AT3G43810 CAM7 calmodulin 7 0.03 Archaeplastida
AT3G56800 CAM3, acam-3 calmodulin 3 0.02 Archaeplastida
AT5G21274 ACAM-6, CAM6 calmodulin 6 0.04 Archaeplastida
Cpa|evm.model.tig00000692.65 No alias Calmodulin-2 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
Cpa|evm.model.tig00001388.4 No alias Caltractin OS=Scherffelia dubia 0.02 Archaeplastida
Cpa|evm.model.tig00001466.13 No alias No description available 0.01 Archaeplastida
Cpa|evm.model.tig00021435.44 No alias Calmodulin OS=Mougeotia scalaris 0.02 Archaeplastida
Cre03.g178150 No alias Calmodulin OS=Chlamydomonas reinhardtii 0.02 Archaeplastida
Cre14.g618000 No alias No description available 0.01 Archaeplastida
GSVIVT01022137001 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 Archaeplastida
GSVIVT01037418001 No alias Calmodulin-related protein OS=Petunia hybrida 0.02 Archaeplastida
GSVIVT01038234001 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 Archaeplastida
LOC_Os05g41210.1 No alias Calmodulin-related protein OS=Petunia hybrida... 0.02 Archaeplastida
MA_15211g0010 No alias Calmodulin-related protein OS=Petunia hybrida... 0.02 Archaeplastida
MA_636426g0010 No alias Calmodulin-related protein OS=Petunia hybrida... 0.02 Archaeplastida
MA_66144g0010 No alias Calmodulin-related protein OS=Petunia hybrida... 0.02 Archaeplastida
Mp6g10070.1 No alias Calmodulin-like protein 5 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Pp3c3_34260V3.1 No alias centrin2 0.02 Archaeplastida
Smo141966 No alias Calmodulin-1 OS=Oryza sativa subsp. indica 0.02 Archaeplastida
Smo83841 No alias Calmodulin-5/6/7/8 OS=Solanum tuberosum 0.02 Archaeplastida
Solyc11g072240.2.1 No alias Calmodulin-related protein OS=Petunia hybrida... 0.02 Archaeplastida
Zm00001e025525_P002 No alias Calmodulin-related protein OS=Petunia hybrida... 0.06 Archaeplastida
Zm00001e027331_P001 No alias Calmodulin-related protein OS=Petunia hybrida... 0.05 Archaeplastida
Zm00001e031996_P001 No alias Calmodulin-related protein OS=Petunia hybrida... 0.04 Archaeplastida
Pp3c3_34260V3.1 No alias centrin2 0.02 LandPlants

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011992 EF-hand-dom_pair 127 187
IPR011992 EF-hand-dom_pair 54 114
No external refs found!