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  5. Ore_g04609

Ore_g04609 (ATRPS13A, RPS13, PFL2, RPS13A)


Aliases : ATRPS13A, RPS13, PFL2, RPS13A

Description : component *(uS15) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001931 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001931_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g04609

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00029190 ATRPS13A, RPS13,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
AT3G60770 No alias Ribosomal protein S13/S15 0.05 OrthoFinder output from all 47 species
AT4G00100 ATRPS13A, RPS13,... ribosomal protein S13A 0.05 OrthoFinder output from all 47 species
Adi_g074584 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Adi_g129880 No alias component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Als_g38582 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aob_g35819 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aop_g01920 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g41112 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Azfi_s0288.g063234 No alias component *(uS15) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.14G028200.1 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Cre07.g331900 ATRPS13A, RPS13,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
Dac_g03966 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01018537001 ATRPS13A, RPS13,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
GSVIVT01027637001 ATRPS13A, RPS13,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Gb_18181 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os08g02400.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.05 OrthoFinder output from all 47 species
LOC_Os08g02410.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.07 OrthoFinder output from all 47 species
Len_g05038 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
MA_141232g0010 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.03 OrthoFinder output from all 47 species
Mp4g03410.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.06 OrthoFinder output from all 47 species
Pp3c16_15220V3.1 ATRPS13A, RPS13,... ribosomal protein S13A 0.03 OrthoFinder output from all 47 species
Pp3c7_26720V3.1 ATRPS13A, RPS13,... ribosomal protein S13A 0.03 OrthoFinder output from all 47 species
Sam_g37409 No alias component *(uS15) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Smo440805 ATRPS13A, RPS13,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Solyc01g091220.3.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.07 OrthoFinder output from all 47 species
Solyc05g051000.3.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.05 OrthoFinder output from all 47 species
Solyc10g018250.2.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.06 OrthoFinder output from all 47 species
Solyc11g072260.2.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.05 OrthoFinder output from all 47 species
Spa_g03180 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Spa_g56598 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Zm00001e021837_P003 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.04 OrthoFinder output from all 47 species
Zm00001e021839_P001 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.06 OrthoFinder output from all 47 species
Zm00001e029210_P002 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000589 Ribosomal_S15 112 176
IPR012606 Ribosomal_S13/S15_N 30 89
No external refs found!