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  5. Aev_g14836

Aev_g14836 (FIP1[V], ATFIP1[V],...)


Aliases : FIP1[V], ATFIP1[V], FIPS5, ATFIPS5

Description : component *(Fip1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & original description: none


Gene families : OG0001918 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001918_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g14836
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AT3G66652 No alias fip1 motif-containing protein 0.02 OrthoFinder output from all 47 species
AT5G58040 FIP1[V],... homolog of yeast FIP1 [V] 0.05 OrthoFinder output from all 47 species
Adi_g059822 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Adi_g085831 FIP1[V],... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20998 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Als_g05760 FIP1[V],... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g26393 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
Aspi01Gene22575.t1 FIP1[V],... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene22579.t1 Aspi01Gene22579 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.31G051000.1 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.06 OrthoFinder output from all 47 species
Cre17.g745547 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g17315 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
GSVIVT01023597001 FIP1[V],... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
GSVIVT01034996001 FIP1[V],... FIP1[V]-like protein OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_32960 FIP1[V],... component Fip1 of Cleavage and Polyadenylation... 0.06 OrthoFinder output from all 47 species
LOC_Os03g51520.1 FIP1[V],... component Fip1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Lfl_g24352 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
MA_10427720g0010 FIP1[V],... FIP1[V]-like protein OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_11233g0040 No alias FIP1[V]-like protein OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp5g14310.1 FIP1[V],... component Fip1 of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
Ore_g43037 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Pir_g11415 FIP1[V],... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g30495 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Ppi_g03287 FIP1[V],... not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g35738 No alias component *(Fip1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Solyc12g099280.2.1 FIP1[V],... FIP1[V]-like protein OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Spa_g04885 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Spa_g15696 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
CC GO:0032039 integrator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR007854 Fip1_dom 464 506
No external refs found!