1. Home
  2. Species
  3. Ophioglossum reticulatum
  4. Sequence
  5. Ore_g04225

Ore_g04225


Description : lipopolysaccharide-binding protein *(LBR) involved in bacterial elicitor response & original description: none


Gene families : OG0005816 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005816_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g04225
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
AT1G04970 No alias lipid-binding serum glycoprotein family protein 0.03 OrthoFinder output from all 47 species
Aev_g01405 No alias lipopolysaccharide-binding protein *(LBR) involved in... 0.02 OrthoFinder output from all 47 species
Aob_g06002 No alias lipopolysaccharide-binding protein *(LBR) involved in... 0.02 OrthoFinder output from all 47 species
Ceric.01G043500.1 Ceric.01G043500 lipopolysaccharide-binding protein *(LBR) involved in... 0.03 OrthoFinder output from all 47 species
LOC_Os09g30474.1 LOC_Os09g30474 Putative BPI/LBP family protein At1g04970 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp7g12170.1 No alias Putative BPI/LBP family protein At1g04970 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ppi_g14405 No alias lipopolysaccharide-binding protein *(LBR) involved in... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007172 No alias lipopolysaccharide-binding protein *(LBR) involved in... 0.03 OrthoFinder output from all 47 species
Spa_g11902 No alias lipopolysaccharide-binding protein *(LBR) involved in... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008289 lipid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043484 regulation of RNA splicing IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP HCCA
BP GO:0050684 regulation of mRNA processing IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:1903311 regulation of mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR017942 Lipid-bd_serum_glycop_N 73 246
IPR001124 Lipid-bd_serum_glycop_C 291 514
No external refs found!