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  5. Ore_g03681

Ore_g03681


Description : RNA editing factor *(OZ) & original description: none


Gene families : OG0001673 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001673_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g03681
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00170p00058310 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT1G53460 No alias BEST Arabidopsis thaliana protein match is: Ran BP2/NZF... 0.02 OrthoFinder output from all 47 species
AT1G55040 No alias zinc finger (Ran-binding) family protein 0.04 OrthoFinder output from all 47 species
Aev_g20942 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g15963 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60534.t1 Aspi01Gene60534 RNA editing factor *(OZ) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g14180 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G001300.1 Ceric.03G001300 RNA editing factor *(OZ) & original description:... 0.03 OrthoFinder output from all 47 species
Ehy_g04668 No alias RNA editing factor *(OZ) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01000088001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01008444001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_13912 No alias RNA editing factor (OZ-type) 0.03 OrthoFinder output from all 47 species
LOC_Os01g10630.1 LOC_Os01g10630 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os03g50120.1 LOC_Os03g50120 RNA editing factor (OZ-type) 0.02 OrthoFinder output from all 47 species
LOC_Os03g50430.1 LOC_Os03g50430 RNA editing factor (OZ-type) 0.04 OrthoFinder output from all 47 species
Lfl_g06216 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g18415 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10436123g0010 No alias RNA editing factor (OZ-type) 0.02 OrthoFinder output from all 47 species
MA_24584g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_7499122g0010 No alias RNA editing factor (OZ-type) 0.05 OrthoFinder output from all 47 species
Mp5g05510.1 No alias RNA editing factor (OZ-type) 0.02 OrthoFinder output from all 47 species
Msp_g09059 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Smo438605 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc01g099230.3.1 Solyc01g099230 RNA editing factor (OZ-type) 0.05 OrthoFinder output from all 47 species
Solyc03g118680.3.1 Solyc03g118680 RNA editing factor (OZ-type) 0.02 OrthoFinder output from all 47 species
Solyc10g007440.3.1 Solyc10g007440 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g11918 No alias RNA editing factor *(OZ) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e012200_P002 Zm00001e012200 RNA editing factor (OZ-type) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 390 420
IPR001876 Znf_RanBP2 426 456
No external refs found!