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  5. Ore_g03561

Ore_g03561 (CP31B)


Aliases : CP31B

Description : not classified & original description: none


Gene families : OG0000715 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000715_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g03561
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00202090 evm_27.TU.AmTr_v1... RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00061p00142700 ATRBP31, CP31,... RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
AMTR_s00166p00060690 ATRBP31, CP31,... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AT3G52150 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
AT3G53460 CP29 chloroplast RNA-binding protein 29 0.05 OrthoFinder output from all 47 species
Adi_g022371 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g10264 ATRBP31, CP31,... plastidial ribonucleoprotein *(CP33a) & original... 0.03 OrthoFinder output from all 47 species
Aop_g14081 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene12453.t1 Aspi01Gene12453 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25641.t1 ATRBP31, CP31,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0007.g010976 No alias not classified & original description: CDS=261-1286 0.02 OrthoFinder output from all 47 species
Azfi_s0017.g014465 ATRBP31, CP31,... not classified & original description: CDS=173-1078 0.02 OrthoFinder output from all 47 species
Azfi_s0037.g026033 No alias not classified & original description: CDS=1-825 0.02 OrthoFinder output from all 47 species
Azfi_s0159.g053948 ATRBP31, CP31,... not classified & original description: CDS=143-1057 0.02 OrthoFinder output from all 47 species
Cba_g20170 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g00421 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g05227 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g00942 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01025697001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.04 OrthoFinder output from all 47 species
Gb_28108 CP31B 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.02 OrthoFinder output from all 47 species
LOC_Os04g50110.1 LOC_Os04g50110 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g10051 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10434075g0010 CP31B component psPSRP2 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
MA_136464g0010 ATRBP31, CP31,... 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.04 OrthoFinder output from all 47 species
Msp_g04850 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02798 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g02906 ATRBP31, CP31,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g41869 ATRBP31, CP31,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g07061 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g06203 No alias plastidial ribonucleoprotein *(CP33a) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g33947 No alias plastidial ribonucleoprotein *(CP33a) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g02835 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015482 ATRBP31, CP31,... not classified & original description: CDS=157-1524 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0122.g021464 CP31B not classified & original description: CDS=19-840 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0137.g022450 ATRBP31, CP31,... not classified & original description: CDS=1-768 0.02 OrthoFinder output from all 47 species
Spa_g07687 ATRBP31, CP31,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e010844_P001 Zm00001e010844 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.03 OrthoFinder output from all 47 species
Zm00001e033465_P001 ATRBP31, CP31,... RNA editing factor (CP31) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 109 179
IPR000504 RRM_dom 206 276
No external refs found!