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  5. Ore_g03183

Ore_g03183 (SHM4)


Aliases : SHM4

Description : EC_2.1 transferase transferring one-carbon group & original description: none


Gene families : OG0000518 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000518_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g03183
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AT4G13890 SHM5, EDA37, EDA36 Pyridoxal phosphate (PLP)-dependent transferases... 0.03 OrthoFinder output from all 47 species
AT4G13930 SHM4 serine hydroxymethyltransferase 4 0.02 OrthoFinder output from all 47 species
Aev_g10440 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Ala_g06665 SHM7 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene72159.t1 SHM4, Aspi01Gene72159 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Cre06.g293950 SHM4 Amino acid metabolism.biosynthesis.serine... 0.02 OrthoFinder output from all 47 species
GSVIVT01003852001 STM, SHM1, SHMT1 Photosynthesis.photorespiration.serine hydroxymethyltransferase 0.03 OrthoFinder output from all 47 species
GSVIVT01003857001 STM, SHM1, SHMT1 Serine hydroxymethyltransferase, mitochondrial... 0.02 OrthoFinder output from all 47 species
GSVIVT01009226001 STM, SHM1, SHMT1 Photosynthesis.photorespiration.serine hydroxymethyltransferase 0.02 OrthoFinder output from all 47 species
LOC_Os01g65410.1 SHM7, LOC_Os01g65410 serine hydroxymethyltransferase. serine hydroxymethyltransferase 0.03 OrthoFinder output from all 47 species
LOC_Os11g26860.1 SHM4, LOC_Os11g26860 Serine hydroxymethyltransferase 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_11357g0010 SHM4 serine hydroxymethyltransferase. serine hydroxymethyltransferase 0.02 OrthoFinder output from all 47 species
Nbi_g01311 SHM7 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Pp3c15_6270V3.1 SHM4, Pp3c15_6270 serine hydroxymethyltransferase 4 0.01 OrthoFinder output from all 47 species
Ppi_g13186 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Smo166496 SHM4 Amino acid metabolism.biosynthesis.serine... 0.03 OrthoFinder output from all 47 species
Solyc05g053810.3.1 SHM4, Solyc05g053810 serine hydroxymethyltransferase. serine hydroxymethyltransferase 0.03 OrthoFinder output from all 47 species
Spa_g04332 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Zm00001e021483_P001 SHM4, Zm00001e021483 serine hydroxymethyltransferase. serine hydroxymethyltransferase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR039429 SHMT-like_dom 14 413
No external refs found!