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  5. LOC_Os12g42530.1

LOC_Os12g42530.1


Description : no hits & (original description: none)


Gene families : OG_01_0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0000003 (LandPlants) Phylogenetic Tree(s): OG_02_0000003_tree ,
OG_03_0013631 (SeedPlants) Phylogenetic Tree(s): OG_03_0013631_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g42530.1
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00271850 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00007p00056710 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00008p00185200 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AMTR_s00008p00200880 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00030p00032810 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00044p00211560 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00102p00069840 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00129p00065710 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AT1G04360 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT2G35910 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT2G42350 No alias RING/U-box superfamily protein 0.07 Archaeplastida
AT3G05200 ATL6 RING/U-box superfamily protein 0.04 Archaeplastida
AT3G60966 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G10160 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT4G11370 RHA1A RING-H2 finger A1A 0.03 Archaeplastida
AT4G15975 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G24015 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT4G38140 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G10380 ATRING1, RING1 RING/U-box superfamily protein 0.03 Archaeplastida
AT5G53110 No alias RING/U-box superfamily protein 0.05 Archaeplastida
GSVIVT01000015001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01000538001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
GSVIVT01012018001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01012022001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01015682001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01018343001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01020665001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01026703001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01027524001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Gb_02533 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_04642 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_04643 No alias RING-H2 finger protein ATL60 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_04644 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_04645 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_05381 No alias RHA2 signal transducer of abscisic acid perception 0.02 Archaeplastida
Gb_05385 No alias RHA2 signal transducer of abscisic acid perception 0.02 Archaeplastida
Gb_08091 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_14778 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_20844 No alias no hits & (original description: none) 0.01 Archaeplastida
Gb_23066 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_28973 No alias Probable E3 ubiquitin-protein ligase RHA1A... 0.02 Archaeplastida
Gb_28980 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_35043 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_40644 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os01g11500.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os01g61470.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os02g15060.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os02g36330.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os03g44636.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os03g57410.1 No alias Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os05g15170.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os06g09310.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os06g14640.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os06g34530.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os06g34560.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os06g34620.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_10106144g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_101154g0010 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
MA_10426834g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_10427748g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_10433358g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_10434759g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10436650g0010 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
MA_114175g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_12363g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_1252g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_130176g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_133839g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_152102g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_167410g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_211g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_227897g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_26001g0020 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_308999g0010 No alias RING-H2 finger protein ATL3 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_308999g0020 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_31462g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_31736g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_38494g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_391590g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_393170g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_43543g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_465316g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_479316g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_569551g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_61738g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_71146g0020 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_7120568g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_759689g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_80729g0030 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_8556123g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_8609304g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_904294g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_9143538g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_92848g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Mp1g27170.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Mp3g00390.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Pp3c14_22300V3.1 No alias No annotation 0.03 Archaeplastida
Pp3c1_9560V3.1 No alias TOXICOS EN LEVADURA 2 0.02 Archaeplastida
Pp3c22_15440V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c23_10580V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c23_1651V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Pp3c24_7770V3.1 No alias hypoxia-responsive family protein / zinc finger... 0.02 Archaeplastida
Pp3c5_4170V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Solyc01g066430.3.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc01g095810.3.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc01g109200.4.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc02g083400.3.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc03g005490.4.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc03g114090.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc04g054370.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc06g053640.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc06g150136.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc07g053420.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc10g008080.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc11g005320.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc12g055710.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e000398_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e002272_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e003264_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e007103_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e007129_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e007956_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e009017_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e009988_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e014709_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e015449_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e016092_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e016470_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e017960_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e019779_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e022781_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e023238_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e023515_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e023723_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e026193_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e026906_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e030930_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e031874_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e034421_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e035560_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e037108_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e041409_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e041824_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
AMTR_s00007p00056710 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 LandPlants
AMTR_s00021p00161170 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.01 LandPlants
AMTR_s00030p00032810 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.01 LandPlants
AMTR_s00102p00069840 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 LandPlants
AMTR_s00129p00065710 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 LandPlants
AMTR_s00140p00098680 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.01 LandPlants
AT1G04360 No alias RING/U-box superfamily protein 0.04 LandPlants
AT2G42350 No alias RING/U-box superfamily protein 0.04 LandPlants
AT4G15975 No alias RING/U-box superfamily protein 0.03 LandPlants
AT5G10380 ATRING1, RING1 RING/U-box superfamily protein 0.03 LandPlants
GSVIVT01020665001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 LandPlants
GSVIVT01026703001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 LandPlants
Gb_02533 No alias RING-H2-class E3 ligase 0.02 LandPlants
Gb_04642 No alias RING-H2-class E3 ligase 0.03 LandPlants
Gb_04643 No alias RING-H2 finger protein ATL60 OS=Arabidopsis thaliana... 0.03 LandPlants
Gb_04644 No alias RING-H2-class E3 ligase 0.03 LandPlants
Gb_04645 No alias RING-H2-class E3 ligase 0.02 LandPlants
Gb_23066 No alias no hits & (original description: none) 0.02 LandPlants
LOC_Os01g61470.1 No alias RING-H2-class E3 ligase 0.03 LandPlants
LOC_Os02g36330.1 No alias RING-H2-class E3 ligase 0.03 LandPlants
LOC_Os06g09310.1 No alias RING-H2-class E3 ligase 0.03 LandPlants
LOC_Os06g14640.1 No alias no hits & (original description: none) 0.02 LandPlants
MA_10106144g0010 No alias RING-H2-class E3 ligase 0.04 LandPlants
MA_101154g0010 No alias RING-H2-class E3 ligase 0.05 LandPlants
MA_10426834g0010 No alias RING-H2-class E3 ligase 0.03 LandPlants
MA_10427748g0010 No alias no hits & (original description: none) 0.05 LandPlants
MA_10433358g0010 No alias no hits & (original description: none) 0.05 LandPlants
MA_10436650g0010 No alias RING-H2-class E3 ligase 0.05 LandPlants
MA_12363g0010 No alias RING-H2-class E3 ligase 0.02 LandPlants
MA_1252g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_167410g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_211g0010 No alias RING-H2-class E3 ligase 0.02 LandPlants
MA_226198g0010 No alias no hits & (original description: none) 0.01 LandPlants
MA_227897g0010 No alias RING-H2-class E3 ligase 0.03 LandPlants
MA_26001g0020 No alias RING-H2-class E3 ligase 0.03 LandPlants
MA_308999g0010 No alias RING-H2 finger protein ATL3 OS=Arabidopsis thaliana... 0.03 LandPlants
MA_43543g0010 No alias RING-H2-class E3 ligase 0.03 LandPlants
MA_465316g0010 No alias RING-H2-class E3 ligase 0.03 LandPlants
MA_479316g0010 No alias no hits & (original description: none) 0.04 LandPlants
MA_5319g0010 No alias RING-H2-class E3 ligase 0.01 LandPlants
MA_569551g0010 No alias no hits & (original description: none) 0.04 LandPlants
MA_61738g0010 No alias no hits & (original description: none) 0.04 LandPlants
MA_6931619g0010 No alias RING-H2-class E3 ligase 0.01 LandPlants
MA_71146g0020 No alias no hits & (original description: none) 0.02 LandPlants
MA_80729g0030 No alias RING-H2-class E3 ligase 0.02 LandPlants
MA_8609304g0010 No alias no hits & (original description: none) 0.05 LandPlants
MA_904294g0010 No alias RING-H2-class E3 ligase 0.02 LandPlants
MA_9143538g0010 No alias no hits & (original description: none) 0.04 LandPlants
MA_92848g0010 No alias RING-H2-class E3 ligase 0.02 LandPlants
Solyc01g066430.3.1 No alias RING-H2-class E3 ligase 0.04 LandPlants
Solyc03g005490.4.1 No alias RING-H2-class E3 ligase 0.02 LandPlants
Solyc06g053640.1.1 No alias RING-H2-class E3 ligase 0.04 LandPlants
Solyc06g150136.1.1 No alias RING-H2-class E3 ligase 0.04 LandPlants
Solyc10g008080.3.1 No alias RING-H2-class E3 ligase 0.02 LandPlants
Solyc11g005310.1.1 No alias RING-H2-class E3 ligase 0.02 LandPlants
Solyc11g005320.1.1 No alias RING-H2-class E3 ligase 0.03 LandPlants
Solyc12g055710.1.1 No alias RING-H2-class E3 ligase 0.02 LandPlants
Solyc12g087840.1.1 No alias RING-H2-class E3 ligase 0.02 LandPlants
Zm00001e000398_P001 No alias RING-H2-class E3 ligase 0.02 LandPlants
Zm00001e002272_P001 No alias no hits & (original description: none) 0.03 LandPlants
Zm00001e007129_P001 No alias RING-H2-class E3 ligase 0.03 LandPlants
Zm00001e009017_P001 No alias no hits & (original description: none) 0.02 LandPlants
Zm00001e022781_P001 No alias RING-H2-class E3 ligase 0.03 LandPlants
Zm00001e023585_P001 No alias RING-H2-class E3 ligase 0.02 LandPlants
Zm00001e026906_P001 No alias no hits & (original description: none) 0.03 LandPlants
Zm00001e031874_P001 No alias no hits & (original description: none) 0.02 LandPlants
Zm00001e035560_P001 No alias RING-H2-class E3 ligase 0.02 LandPlants
Zm00001e037108_P001 No alias no hits & (original description: none) 0.04 LandPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 81 106
No external refs found!