Ppi_g63807 (RAD23B, RAD23)


Aliases : RAD23B, RAD23

Description : ubiquitin-proteasome shuttle factor *(RAD23) & original description: none


Gene families : OG0001068 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001068_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g63807
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00156p00078120 RAD23D,... Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
Aev_g45033 RAD23D ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
Aop_g31214 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.21 RAD23D Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre08.g366400 RAD23B, RAD23 Ubiquitin receptor RAD23b OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os08g33340.1 RAD23D, LOC_Os08g33340 shuttle protein (RAD23) 0.03 OrthoFinder output from all 47 species
Len_g27857 RAD23A ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.04 OrthoFinder output from all 47 species
Mp1g26290.1 RAD23B, RAD23 shuttle protein (RAD23) 0.04 OrthoFinder output from all 47 species
Pir_g08671 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g31543 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.04 OrthoFinder output from all 47 species
Pp3c18_16820V3.1 RAD23B, RAD23,... Rad23 UV excision repair protein family 0.01 OrthoFinder output from all 47 species
Solyc02g063130.4.1 RAD23-3, RAD23C,... shuttle protein (RAD23) 0.04 OrthoFinder output from all 47 species
Tin_g19292 RAD23B, RAD23 ubiquiTin-proteasome shuttle factor *(RAD23) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e036768_P002 RAD23D, Zm00001e036768 shuttle protein (RAD23) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
BP GO:0015693 magnesium ion transport IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR015360 XPC-bd 285 340
IPR015940 UBA 170 207
IPR015940 UBA 369 404
IPR000626 Ubiquitin-like_dom 3 76
No external refs found!