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  5. Ppi_g62455

Ppi_g62455


Description : not classified & original description: none


Gene families : OG0005770 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005770_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g62455

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00260810 evm_27.TU.AmTr_v1... DNA damage-binding protein 1 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
Adi_g008160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07804 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene11696.t1 Aspi01Gene11696 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g12316 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.37G065800.1 Ceric.37G065800 not classified & original description: pacid=50615955... 0.04 OrthoFinder output from all 47 species
Gb_25386 No alias Spliceosome-associated protein 130 A OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os07g10390.1 LOC_Os07g10390 DNA damage-binding protein 1a OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Len_g11463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02452 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
MA_129261g0030 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_20031g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g14215 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09586 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017149 No alias not classified & original description: CDS=63-4370 0.02 OrthoFinder output from all 47 species
Solyc10g080630.2.1 Solyc10g080630 Spliceosome-associated protein 130 A OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Tin_g05247 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e033071_P001 Zm00001e033071 DNA damage-binding protein 1a OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR018846 Cleavage/polyA-sp_fac_asu_N 134 706
IPR004871 Cleavage/polyA-sp_fac_asu_C 1005 1364
No external refs found!