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  5. AMTR_s00004p00261980

AMTR_s00004p00261980 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00004.259

Description : RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor


Gene families : OG_01_0001445 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001445_tree ,
OG_02_0001091 (LandPlants) Phylogenetic Tree(s): OG_02_0001091_tree ,
OG_03_0001027 (SeedPlants) Phylogenetic Tree(s): OG_03_0001027_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00004p00261980
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
AT3G18640 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.04 Archaeplastida
LOC_Os05g41790.1 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
MA_8408g0030 No alias no hits & (original description: none) 0.02 Archaeplastida
AT2G33835 FES1 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 LandPlants
AT3G18640 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 LandPlants
LOC_Os05g41790.1 No alias C3H zinc finger transcription factor 0.03 LandPlants
MA_8408g0030 No alias no hits & (original description: none) 0.02 LandPlants
Pp3c4_15980V3.1 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 LandPlants
Solyc06g069440.3.1 No alias Zinc finger CCCH domain-containing protein 38... 0.02 LandPlants
AT3G18640 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 SeedPlants
GSVIVT01008114001 No alias Zinc finger CCCH domain-containing protein 38... 0.02 SeedPlants
LOC_Os05g41790.1 No alias C3H zinc finger transcription factor 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 332 350
No external refs found!