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  5. Aev_g14080

Aev_g14080


Description : component *(NOT3) of mRNA deadenylation CCR4-NOT complex & original description: none


Gene families : OG0003951 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003951_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g14080

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00217710 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
AT5G18230 No alias transcription regulator NOT2/NOT3/NOT5 family protein 0.02 OrthoFinder output from all 47 species
Adi_g021088 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Ala_g02487 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000057.119 No alias RNA processing.RNA decay.deadenylation-dependent... 0.01 OrthoFinder output from all 47 species
Cre04.g227350 No alias RNA processing.RNA decay.deadenylation-dependent... 0.01 OrthoFinder output from all 47 species
Dcu_g13304 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.04 OrthoFinder output from all 47 species
GSVIVT01033382001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
LOC_Os03g44900.1 LOC_Os03g44900 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.05 OrthoFinder output from all 47 species
Lfl_g02194 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Mp5g06180.1 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.03 OrthoFinder output from all 47 species
Ppi_g05930 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Solyc12g019860.2.1 Solyc12g019860 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.03 OrthoFinder output from all 47 species
Spa_g26106 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Zm00001e012376_P003 Zm00001e012376 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000272 polysaccharide catabolic process IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0071203 WASH complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007207 Not_N 4 229
IPR007282 NOT2/3/5_C 831 965
No external refs found!