LOC_Os12g34340.1


Description : Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana (sp|q9sy07|pp302_arath : 473.0)


Gene families : OG_01_0000235 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000235_tree ,
OG_02_0000298 (LandPlants) Phylogenetic Tree(s): OG_02_0000298_tree ,
OG_03_0002585 (SeedPlants) Phylogenetic Tree(s): OG_03_0002585_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g34340.1
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00095p00019470 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80270,... 0.03 Archaeplastida
AT1G02370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT1G15480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT1G60770 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 0.04 Archaeplastida
AT3G15590 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT4G01990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT4G02820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
GSVIVT01002065001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.05 Archaeplastida
GSVIVT01006654001 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.05 Archaeplastida
GSVIVT01020533001 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.05 Archaeplastida
GSVIVT01020534001 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.03 Archaeplastida
GSVIVT01024495001 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.03 Archaeplastida
GSVIVT01031246001 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.05 Archaeplastida
GSVIVT01033642001 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.03 Archaeplastida
Gb_09452 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 Archaeplastida
Gb_20238 No alias RNA editing factor (POCO) 0.04 Archaeplastida
LOC_Os02g55310.1 No alias Pentatricopeptide repeat-containing protein At5g27460... 0.02 Archaeplastida
LOC_Os10g35760.2 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.03 Archaeplastida
MA_100637g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
MA_10431989g0010 No alias RNA editing factor (POCO) 0.03 Archaeplastida
MA_10435629g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
MA_128872g0020 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.03 Archaeplastida
MA_492314g0010 No alias RNA editing factor (POCO) 0.05 Archaeplastida
MA_7558g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 Archaeplastida
MA_94340g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
Pp3c18_8600V3.1 No alias PENTATRICOPEPTIDE REPEAT 596 0.02 Archaeplastida
Pp3c21_11730V3.1 No alias PENTATRICOPEPTIDE REPEAT 596 0.02 Archaeplastida
Smo420704 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.03 Archaeplastida
Smo444770 No alias Pentatricopeptide repeat-containing protein At3g15590,... 0.02 Archaeplastida
Solyc01g079320.4.1 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.08 Archaeplastida
Solyc01g100580.3.1 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.03 Archaeplastida
Solyc02g078330.3.1 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.02 Archaeplastida
Solyc07g054090.3.1 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.04 Archaeplastida
Solyc07g063220.4.1 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.07 Archaeplastida
Solyc11g006380.2.1 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
Solyc12g020050.2.1 No alias RNA editing factor (POCO) 0.07 Archaeplastida
Zm00001e012594_P001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.04 Archaeplastida
Zm00001e026211_P002 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.03 Archaeplastida
Zm00001e036620_P001 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.04 Archaeplastida
Zm00001e039746_P002 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.03 Archaeplastida
AMTR_s00002p00190720 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g02150... 0.02 LandPlants
AT1G02370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 LandPlants
AT1G60770 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 LandPlants
AT4G01990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 LandPlants
AT4G02820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 LandPlants
AT4G21705 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
GSVIVT01002065001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.06 LandPlants
GSVIVT01006654001 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.05 LandPlants
GSVIVT01020533001 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.05 LandPlants
GSVIVT01020534001 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.03 LandPlants
GSVIVT01024495001 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.03 LandPlants
GSVIVT01031246001 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.05 LandPlants
Gb_09452 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 LandPlants
Gb_20238 No alias RNA editing factor (POCO) 0.02 LandPlants
LOC_Os02g55310.1 No alias Pentatricopeptide repeat-containing protein At5g27460... 0.02 LandPlants
LOC_Os10g35760.2 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.03 LandPlants
MA_100637g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 LandPlants
MA_10435629g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 LandPlants
MA_128872g0020 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.03 LandPlants
MA_29806g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 LandPlants
MA_7558g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 LandPlants
MA_94340g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 LandPlants
Smo413483 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.02 LandPlants
Smo420704 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.03 LandPlants
Solyc01g079320.4.1 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.08 LandPlants
Solyc01g100580.3.1 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.03 LandPlants
Solyc02g078330.3.1 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.03 LandPlants
Solyc06g005140.3.1 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.02 LandPlants
Solyc07g054090.3.1 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.04 LandPlants
Solyc07g063220.4.1 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.06 LandPlants
Solyc11g006380.2.1 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 LandPlants
Zm00001e012594_P001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.04 LandPlants
Zm00001e026211_P002 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.03 LandPlants
Zm00001e036620_P001 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 LandPlants
Zm00001e039746_P002 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.02 LandPlants
AT1G02370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 SeedPlants
AT4G01990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 SeedPlants
AT4G02820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 SeedPlants
GSVIVT01024495001 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.02 SeedPlants
MA_7558g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 SeedPlants
Solyc01g079320.4.1 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.05 SeedPlants
Solyc06g005140.3.1 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 211 254
IPR002885 Pentatricopeptide_repeat 145 174
IPR002885 Pentatricopeptide_repeat 357 384
IPR002885 Pentatricopeptide_repeat 182 207
No external refs found!