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  5. Ppi_g58066

Ppi_g58066


Description : component *(eL34) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000940 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000940_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g58066
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00260730 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AT1G26880 No alias Ribosomal protein L34e superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G69620 RPL34 ribosomal protein L34 0.03 OrthoFinder output from all 47 species
AT3G28900 No alias Ribosomal protein L34e superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g023873 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0045.g029897 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0225.g058934 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.29G078700.1 Ceric.29G078700 component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000632.3 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Cre16.g661050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Dac_g02443 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dcu_g28753 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01019985001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
LOC_Os08g06040.1 LOC_Os08g06040 component RPL34 of LSU proteome component 0.05 OrthoFinder output from all 47 species
LOC_Os08g33920.1 LOC_Os08g33920 component RPL34 of LSU proteome component 0.04 OrthoFinder output from all 47 species
LOC_Os09g24690.1 LOC_Os09g24690 component RPL34 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Len_g06750 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_109553g0010 No alias component RPL34 of LSU proteome component 0.03 OrthoFinder output from all 47 species
MA_7581523g0010 No alias component RPL34 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Mp4g17040.1 No alias component RPL34 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Msp_g09133 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Nbi_g20020 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c11_2940V3.1 RPL34, Pp3c11_2940 Ribosomal protein L34e superfamily protein 0.03 OrthoFinder output from all 47 species
Pp3c11_3090V3.1 RPL34, Pp3c11_3090 Ribosomal protein L34e superfamily protein 0.02 OrthoFinder output from all 47 species
Pp3c2_34570V3.1 Pp3c2_34570 Ribosomal protein L34e superfamily protein 0.01 OrthoFinder output from all 47 species
Sam_g22792 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Smo113433 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Solyc05g007560.3.1 Solyc05g007560 component RPL34 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Solyc06g069860.4.1 Solyc06g069860 component RPL34 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Spa_g37008 No alias component *(eL34) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e004116_P001 Zm00001e004116 component RPL34 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Zm00001e021733_P002 Zm00001e021733 component RPL34 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Zm00001e022460_P001 Zm00001e022460 component RPL34 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e034114_P001 Zm00001e034114 component RPL34 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Zm00001e040229_P001 Zm00001e040229 component RPL34 of LSU proteome component 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP HCCA
MF GO:0008430 selenium binding IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070070 proton-transporting V-type ATPase complex assembly IEP HCCA
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP HCCA
BP GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly IEP HCCA
InterPro domains Description Start Stop
IPR008195 Ribosomal_L34Ae 46 141
No external refs found!