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  5. Ppi_g57254

Ppi_g57254


Description : basal transcription factor *(TFIIb) & original description: none


Gene families : OG0001894 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001894_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g57254
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Aob_g05757 No alias basal transcription factor *(TFIIb) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01033246001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
Ore_g04311 No alias basal transcription factor *(TFIIb) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc10g079360.3.1 Solyc10g079360 basal transcription factor (TFIIb) 0.02 OrthoFinder output from all 47 species
Spa_g09046 No alias basal transcription factor *(TFIIb) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g18628 No alias basal transcription factor *(TFIIb) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0017025 TBP-class protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
BP GO:0015693 magnesium ion transport IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051179 localization IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR013137 Znf_TFIIB 5 47
IPR013150 TFIIB_cyclin 204 268
IPR013150 TFIIB_cyclin 101 184
No external refs found!