Ppi_g57111

Description : not classified & original description: none

Gene families : OG0005612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005612_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g57111

Target	Alias	Description	ECC score	Gene Family Method
Als_g00983	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g31815	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g00762	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Mp7g04610.1	No alias	DEAD-box ATP-dependent RNA helicase 16 OS=Oryza sativa...	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007113	No alias	not classified & original description: CDS=89-1525	0.03	OrthoFinder output from all 47 species
Solyc02g070100.3.1	Solyc02g070100	DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Spa_g09337	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0005777	peroxisome	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007031	peroxisome organization	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
CC	GO:0042579	microbody	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	257	408
IPR011545	DEAD/DEAH_box_helicase_dom	41	217

External Links

No external refs found!