Ppi_g56964 (SRCAP, PIE1, chr13)

Aliases : SRCAP, PIE1, chr13

Description : ATPase component *(PIE1) of SWR1 chromatin remodeling complex & original description: none

Gene families : OG0002986 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002986_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g56964

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00085p00089520	SRCAP, PIE1,...	Chromatin organisation.chromatin remodeling...	0.04	OrthoFinder output from all 47 species
AT3G12810	SRCAP, PIE1, chr13	SNF2 domain-containing protein / helicase...	0.06	OrthoFinder output from all 47 species
Adi_g086891	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Aev_g17049	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.06	OrthoFinder output from all 47 species
Ala_g20021	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.06	OrthoFinder output from all 47 species
Ala_g21115	SRCAP, PIE1, chr13	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Als_g04504	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.06	OrthoFinder output from all 47 species
Als_g11978	SRCAP, PIE1, chr13	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g13991	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Ceric.22G011100.1	SRCAP, PIE1,...	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000194.26	SRCAP, PIE1, chr13	Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1...	0.03	OrthoFinder output from all 47 species
Cre14.g618860	SRCAP, PIE1, chr13	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Dcu_g08326	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.12	OrthoFinder output from all 47 species
Dcu_g39491	SRCAP, PIE1, chr13	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g22840	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.05	OrthoFinder output from all 47 species
GSVIVT01033511001	SRCAP, PIE1, chr13	Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1...	0.08	OrthoFinder output from all 47 species
Gb_04358	SRCAP, PIE1, chr13	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.05	OrthoFinder output from all 47 species
Gb_30810	SRCAP, PIE1, chr13	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.04	OrthoFinder output from all 47 species
Gb_30812	SRCAP, PIE1, chr13	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
LOC_Os02g46450.2	SRCAP, PIE1,...	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.06	OrthoFinder output from all 47 species
Len_g28435	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.03	OrthoFinder output from all 47 species
MA_424432g0010	SRCAP, PIE1, chr13	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.06	OrthoFinder output from all 47 species
MA_64269g0010	SRCAP, PIE1, chr13	Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1...	0.05	OrthoFinder output from all 47 species
MA_9456975g0010	SRCAP, PIE1, chr13	Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1...	0.03	OrthoFinder output from all 47 species
Msp_g15065	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Pir_g11854	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005513	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Sam_g11626	No alias	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Solyc03g063210.3.1	SRCAP, PIE1,...	Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1...	0.04	OrthoFinder output from all 47 species
Solyc03g063220.2.1	SRCAP, PIE1,...	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.1	OrthoFinder output from all 47 species
Spa_g09110	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.05	OrthoFinder output from all 47 species
Zm00001e015483_P001	SRCAP, PIE1,...	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.06	OrthoFinder output from all 47 species
Zm00001e023267_P001	SRCAP, PIE1,...	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	PNGGO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
MF	GO:0008276	protein methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
MF	GO:0016278	lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0018024	histone lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
MF	GO:0042054	histone methyltransferase activity	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	474	745
IPR014012	HSA_dom	26	92
IPR001650	Helicase_C	1000	1111

External Links

No external refs found!

Ppi_g56964 (SRCAP, PIE1, chr13)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation