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  5. Ppi_g56938

Ppi_g56938


Description : not classified & original description: none


Gene families : OG0004502 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004502_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g56938
Cluster HCCA: Cluster_274

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene28413.t1 Aspi01Gene28413 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_193509g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_41847g0010 No alias Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ore_g05013 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g16161 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g056570.3.1 Solyc01g056570 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
CC GO:0031011 Ino80 complex IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097346 INO80-type complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
InterPro domains Description Start Stop
IPR002110 Ankyrin_rpt 44 96
IPR000408 Reg_chr_condens 150 196
IPR000408 Reg_chr_condens 260 307
IPR000408 Reg_chr_condens 311 361
IPR000408 Reg_chr_condens 200 255
No external refs found!