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  5. Ppi_g56291

Ppi_g56291 (PAP(IV), nPAP)


Aliases : PAP(IV), nPAP

Description : poly(A) RNA polymerase & original description: none


Gene families : OG0000731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000731_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g56291

Target Alias Description ECC score Gene Family Method Actions
Adi_g055927 PAPS1 poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0102.g044509 PAP(IV), nPAP poly(A) RNA polymerase & original description: CDS=1-2214 0.03 OrthoFinder output from all 47 species
GSVIVT01008352001 PAPS1 RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species
Ore_g44222 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0034508 centromere complex assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR007010 PolA_pol_RNA-bd_dom 358 415
IPR007010 PolA_pol_RNA-bd_dom 417 481
IPR007012 PolA_pol_cen_dom 11 354
IPR002934 Polymerase_NTP_transf_dom 84 151
No external refs found!