LOC_Os12g21930.1


Description : Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana (sp|q9xim8|pp155_arath : 194.0)


Gene families : OG_01_0000731 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000731_tree ,
OG_02_0000430 (LandPlants) Phylogenetic Tree(s): OG_02_0000430_tree ,
OG_03_0000220 (SeedPlants) Phylogenetic Tree(s): OG_03_0000220_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g21930.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00203030 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00048p00141020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g01110... 0.03 Archaeplastida
AMTR_s00059p00156460 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00061p00202160 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g55840... 0.04 Archaeplastida
AT2G15980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G26680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT5G01110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT5G40400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G55840 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
GSVIVT01008360001 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.02 Archaeplastida
GSVIVT01009638001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_03214 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Gb_03521 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_07698 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.03 Archaeplastida
Gb_20239 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.03 Archaeplastida
LOC_Os03g40690.1 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.01 Archaeplastida
MA_278706g0010 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.03 Archaeplastida
MA_302333g0010 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.02 Archaeplastida
MA_59385g0010 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.03 Archaeplastida
MA_6175g0010 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.04 Archaeplastida
MA_64750g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Solyc02g021270.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e035584_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00019p00203030 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
AMTR_s00048p00141020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g01110... 0.03 LandPlants
AMTR_s00061p00202160 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g55840... 0.03 LandPlants
AT2G15980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 LandPlants
AT5G40400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
GSVIVT01009638001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
Gb_03521 No alias Putative pentatricopeptide repeat-containing protein... 0.03 LandPlants
Gb_07698 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.03 LandPlants
Gb_20239 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.02 LandPlants
Gb_26765 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
LOC_Os03g40690.1 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.01 LandPlants
MA_278706g0010 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.02 LandPlants
MA_59385g0010 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.02 LandPlants
MA_6175g0010 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.03 LandPlants
MA_64750g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
Zm00001e035584_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
AMTR_s00048p00141020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g01110... 0.01 SeedPlants
AT2G15980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 SeedPlants
AT4G26680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 SeedPlants
GSVIVT01008360001 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.01 SeedPlants
GSVIVT01009638001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 SeedPlants
Gb_03521 No alias Putative pentatricopeptide repeat-containing protein... 0.03 SeedPlants
MA_278706g0010 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.01 SeedPlants
MA_59385g0010 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.01 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 212 260
IPR002885 Pentatricopeptide_repeat 282 331
No external refs found!