Ppi_g53376


Description : ssDNA-binding protein *(OSB) & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g53376

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00241920 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
AMTR_s00011p00233950 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.02 OrthoFinder output from all 47 species
AMTR_s00031p00067070 emb1899, EMB175, EMB166 Pentatricopeptide repeat-containing protein At5g03800... 0.02 OrthoFinder output from all 47 species
AMTR_s00032p00219990 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
AMTR_s00038p00071780 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g26540... 0.02 OrthoFinder output from all 47 species
AMTR_s00039p00023570 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
AT3G22150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G46790 CRR2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g002042 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g004501 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g011417 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g016795 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g021159 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034292 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g041176 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g066118 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g066744 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069023 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g080049 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g082441 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101155 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101179 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g11263 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g23915 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g24804 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g25320 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g17656 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19281 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g23634 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61269 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g63751 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g43028 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05366.t1 VAC1, ECB2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14586.t1 Aspi01Gene14586 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19500.t2 Aspi01Gene19500 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30532.t1 Aspi01Gene30532 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene68665.t1 CRR22, Aspi01Gene68665 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000996 OTP84 not classified & original description: CDS=1-3012 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009143 No alias not classified & original description: CDS=1-4677 0.03 OrthoFinder output from all 47 species
Azfi_s0015.g013865 No alias not classified & original description: CDS=1-1626 0.03 OrthoFinder output from all 47 species
Azfi_s0068.g036353 No alias not classified & original description: CDS=1-2463 0.03 OrthoFinder output from all 47 species
Azfi_s0095.g043642 No alias not classified & original description: CDS=144-2255 0.04 OrthoFinder output from all 47 species
Cba_g07299 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19910 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g25200 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67913 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g71700 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G112800.1 Ceric.04G112800 not classified & original description: pacid=50632583... 0.03 OrthoFinder output from all 47 species
Ceric.10G062000.1 Ceric.10G062000 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.11G085300.1 Ceric.11G085300 not classified & original description: pacid=50596385... 0.02 OrthoFinder output from all 47 species
Ceric.27G011400.1 Ceric.27G011400 not classified & original description: pacid=50605728... 0.03 OrthoFinder output from all 47 species
Ceric.31G020200.1 Ceric.31G020200 not classified & original description: pacid=50574865... 0.03 OrthoFinder output from all 47 species
Ceric.36G048100.1 Ceric.36G048100 not classified & original description: pacid=50568569... 0.02 OrthoFinder output from all 47 species
Dac_g16704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06433 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43321 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45215 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g03975 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g04286 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04921 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05954 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15390 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15730 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16098 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16894 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19712 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21688 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21994 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22008 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22016 OTP86 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25739 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g26347 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g28232 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g35725 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g38179 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g41966 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g43777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47958 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50301 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g50967 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009227001 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
GSVIVT01032721001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.02 OrthoFinder output from all 47 species
GSVIVT01033190001 OTP82 Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
LOC_Os09g07780.1 OTP84, LOC_Os09g07780 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
Len_g05419 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g08358 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17531 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23907 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44152 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04966 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06634 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06726 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06733 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07396 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07701 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07827 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12096 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g14377 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g15216 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g25612 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32911 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38033 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40602 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_11138g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_217g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_381817g0020 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
MA_4438g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
MA_5481g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
MA_597g0020 DOT4 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_615077g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 OrthoFinder output from all 47 species
Msp_g41100 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g04969 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07151 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g24679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27841 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g32642 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g12907 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g15249 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01657 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13600 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57968 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57973 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g60415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g61389 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63846 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g13243 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15312 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30109 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004510 No alias not classified & original description: CDS=121-2523 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008151 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0091.g018780 No alias not classified & original description: CDS=1-2574 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0144.g022950 EMB2261 not classified & original description: CDS=1-2124 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0206.g025782 No alias not classified & original description: CDS=1-2394 0.03 OrthoFinder output from all 47 species
Sam_g13764 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14049 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g28579 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29223 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g48865 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50534 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g007850.2.1 Solyc01g007850 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Solyc02g081900.4.1 OTP84, Solyc02g081900 RNA editing factor (OTP84) 0.03 OrthoFinder output from all 47 species
Solyc03g114660.1.1 Solyc03g114660 Pentatricopeptide repeat-containing protein At1g18485... 0.02 OrthoFinder output from all 47 species
Spa_g06014 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g10323 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g08462 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e021457_P001 CRR22, Zm00001e021457 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Zm00001e022253_P001 Zm00001e022253 Pentatricopeptide repeat-containing protein At1g59720,... 0.02 OrthoFinder output from all 47 species
Zm00001e023498_P001 VAC1, ECB2,... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 249 297
IPR002885 Pentatricopeptide_repeat 147 194
IPR002885 Pentatricopeptide_repeat 454 501
IPR002885 Pentatricopeptide_repeat 351 398
IPR002885 Pentatricopeptide_repeat 528 554
IPR002885 Pentatricopeptide_repeat 428 450
IPR002885 Pentatricopeptide_repeat 85 112
IPR002885 Pentatricopeptide_repeat 122 146
No external refs found!