Ppi_g52211

Description : assembly factor involved in ITS1 rRNA removal *(BRIX1) & original description: none

Gene families : OG0005675 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005675_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g52211

Target	Alias	Description	ECC score	Gene Family Method
Ceric.16G037900.1	Ceric.16G037900	assembly factor involved in ITS1 rRNA removal *(BRIX1) &...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001206.16	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Cre02.g095400	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Dac_g07263	No alias	assembly factor involved in ITS1 rRNA removal *(BRIX1) &...	0.03	OrthoFinder output from all 47 species
Lfl_g07018	No alias	assembly factor involved in ITS1 rRNA removal *(BRIX1) &...	0.03	OrthoFinder output from all 47 species
Mp4g04670.1	No alias	BRX1 assembly factor involved in ITS1 rRNA removal	0.03	OrthoFinder output from all 47 species
Msp_g04747	No alias	assembly factor involved in ITS1 rRNA removal *(BRIX1) &...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0094.g019176	No alias	assembly factor involved in ITS1 rRNA removal *(BRIX1) &...	0.02	OrthoFinder output from all 47 species
Sam_g52557	No alias	assembly factor involved in ITS1 rRNA removal *(BRIX1) &...	0.03	OrthoFinder output from all 47 species
Solyc04g016380.3.1	Solyc04g016380	BRX1 assembly factor involved in ITS1 rRNA removal	0.02	OrthoFinder output from all 47 species
Tin_g03875	No alias	assembly factor involved in ITS1 rRNA removal *(BRIX1) &...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005524	ATP binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030688	preribosome, small subunit precursor	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007109	Brix	56	245

External Links

No external refs found!