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  5. Aev_g13081

Aev_g13081 (XPB1, ATXPB1)


Aliases : XPB1, ATXPB1

Description : component *(SSL2/XPB) of TFIIh basal transcription factor complex & original description: none


Gene families : OG0001065 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0001065_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g13081

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00265330 XPB1, ATXPB1,... RNA biosynthesis.RNA polymerase II-dependent... 0.01 OrthoFinder output from all 39 species
Ala_g21273 XPB1, ATXPB1 component *(SSL2/XPB) of TFIIh basal transcription... 0.01 OrthoFinder output from all 39 species
Als_g20947 XPB1, ATXPB1 component *(SSL2/XPB) of TFIIh basal transcription... 0.02 OrthoFinder output from all 39 species
Dcu_g33731 XPB1, ATXPB1 component *(SSL2/XPB) of TFIIh basal transcription... 0.02 OrthoFinder output from all 39 species
Lfl_g38242 XPB1, ATXPB1 component *(SSL2/XPB) of TFIIh basal transcription... 0.01 OrthoFinder output from all 39 species
Msp_g07411 XPB1, ATXPB1 component *(SSL2/XPB) of TFIIh basal transcription... 0.01 OrthoFinder output from all 39 species
Ore_g15611 XPB1, ATXPB1 component *(SSL2/XPB) of TFIIh basal transcription... 0.01 OrthoFinder output from all 39 species
Pir_g08305 XPB1, ATXPB1 component *(SSL2/XPB) of TFIIh basal transcription... 0.01 OrthoFinder output from all 39 species
Smo147068 XPB1, ATXPB1 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 39 species
Spa_g00759 XPB1, ATXPB1 component *(SSL2/XPB) of TFIIh basal transcription... 0.01 OrthoFinder output from all 39 species
Spa_g29009 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
Tin_g04146 XPB1, ATXPB1 component *(SSL2/XPB) of TFIIh basal transcription... 0.02 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006935 Helicase/UvrB_N 297 453
IPR032438 ERCC3_RAD25_C 479 727
IPR032830 XPB/Ssl2_N 78 201
No external refs found!