LOC_Os12g10580.1

Description : component psRPS15 of small ribosomal subunit proteome

Gene families : OG_01_0001030 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001030_tree ,
OG_02_0000707 (LandPlants) Phylogenetic Tree(s): OG_02_0000707_tree ,
OG_03_0000483 (SeedPlants) Phylogenetic Tree(s): OG_03_0000483_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os12g10580.1
Cluster	HCCA: Cluster_65

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00272640	evm_27.TU.AmTr_v1...	Ribulose bisphosphate carboxylase large chain OS=Nymphaea alba	0.12	Archaeplastida
AMTR_s00012p00184400	evm_27.TU.AmTr_v1...	Ribulose bisphosphate carboxylase large chain...	0.12	Archaeplastida
AMTR_s00606p00006850	evm_27.TU.AmTr_v1...	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.12	Archaeplastida
ATCG00490	RBCL	ribulose-bisphosphate carboxylases	0.37	Archaeplastida
ATMG00280	ORF110A	Ribulose bisphosphate carboxylase large chain, catalytic domain	0.07	Archaeplastida
GSVIVT01013856001	No alias	Ribulose bisphosphate carboxylase large chain (Fragment)...	0.09	Archaeplastida
GSVIVT01022403001	No alias	Ribulose bisphosphate carboxylase large chain OS=Sesbania sesban	0.09	Archaeplastida
Gb_07644	No alias	Ribulose bisphosphate carboxylase large chain...	0.16	Archaeplastida
Gb_15502	No alias	Ribulose bisphosphate carboxylase large chain...	0.16	Archaeplastida
Gb_18620	No alias	Ribulose bisphosphate carboxylase large chain...	0.05	Archaeplastida
Gb_25934	No alias	Ribulose bisphosphate carboxylase large chain...	0.05	Archaeplastida
Gb_34523	No alias	Ribulose bisphosphate carboxylase large chain (Fragment)...	0.16	Archaeplastida
Gb_37464	No alias	Ribulose bisphosphate carboxylase large chain...	0.16	Archaeplastida
MA_103636g0010	No alias	Ribulose bisphosphate carboxylase large chain...	0.02	Archaeplastida
Mp3g01300.1	No alias	no hits & (original description: none)	0.08	Archaeplastida
Smo137874	No alias	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.24	Archaeplastida
Solyc00g500063.1.1	No alias	large subunit of ribulose-1,5-bisphosphat...	0.4	Archaeplastida
Solyc07g021200.1.1	No alias	Ribulose bisphosphate carboxylase large chain (Fragment)...	0.33	Archaeplastida
Solyc12g062540.3.1	No alias	Ribulose bisphosphate carboxylase large chain (Fragment)...	0.03	Archaeplastida
Solyc12g062550.1.1	No alias	Ribulose bisphosphate carboxylase large chain OS=Solanum...	0.05	Archaeplastida
Zm00001e002755_P001	No alias	Ribulose bisphosphate carboxylase large chain OS=Zea...	0.07	Archaeplastida
Zm00001e010393_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e031080_P001	No alias	Ribulose bisphosphate carboxylase large chain OS=Zea...	0.22	Archaeplastida
Zm00001e042029_P001	No alias	large subunit of ribulose-1,5-bisphosphat...	0.23	Archaeplastida
Zm00001e042051_P001	No alias	large subunit of ribulose-1,5-bisphosphat...	0.26	Archaeplastida
Zm00001e042083_P001	No alias	large subunit of ribulose-1,5-bisphosphat...	0.27	Archaeplastida
Zm00001e042095_P001	No alias	large subunit of ribulose-1,5-bisphosphat...	0.28	Archaeplastida
Zm00001e042351_P001	No alias	no hits & (original description: none)	0.13	Archaeplastida
Zm00001e042403_P001	No alias	large subunit of ribulose-1,5-bisphosphat...	0.28	Archaeplastida
Zm00001e042465_P001	No alias	Ribulose bisphosphate carboxylase large chain OS=Zea...	0.05	Archaeplastida
AMTR_s00001p00272640	evm_27.TU.AmTr_v1...	Ribulose bisphosphate carboxylase large chain OS=Nymphaea alba	0.12	LandPlants
AMTR_s00012p00184400	evm_27.TU.AmTr_v1...	Ribulose bisphosphate carboxylase large chain...	0.12	LandPlants
AMTR_s00606p00006850	evm_27.TU.AmTr_v1...	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.12	LandPlants
ATCG00490	RBCL	ribulose-bisphosphate carboxylases	0.36	LandPlants
ATMG00280	ORF110A	Ribulose bisphosphate carboxylase large chain, catalytic domain	0.03	LandPlants
GSVIVT01013856001	No alias	Ribulose bisphosphate carboxylase large chain (Fragment)...	0.09	LandPlants
GSVIVT01022403001	No alias	Ribulose bisphosphate carboxylase large chain OS=Sesbania sesban	0.09	LandPlants
Gb_07644	No alias	Ribulose bisphosphate carboxylase large chain...	0.16	LandPlants
Gb_15502	No alias	Ribulose bisphosphate carboxylase large chain...	0.16	LandPlants
Gb_18620	No alias	Ribulose bisphosphate carboxylase large chain...	0.05	LandPlants
Gb_25934	No alias	Ribulose bisphosphate carboxylase large chain...	0.05	LandPlants
Gb_34523	No alias	Ribulose bisphosphate carboxylase large chain (Fragment)...	0.15	LandPlants
Gb_37464	No alias	Ribulose bisphosphate carboxylase large chain...	0.16	LandPlants
MA_103636g0010	No alias	Ribulose bisphosphate carboxylase large chain...	0.02	LandPlants
Mp3g01300.1	No alias	no hits & (original description: none)	0.08	LandPlants
Smo137874	No alias	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.23	LandPlants
Solyc00g500063.1.1	No alias	large subunit of ribulose-1,5-bisphosphat...	0.39	LandPlants
Solyc07g021200.1.1	No alias	Ribulose bisphosphate carboxylase large chain (Fragment)...	0.32	LandPlants
Solyc12g062540.3.1	No alias	Ribulose bisphosphate carboxylase large chain (Fragment)...	0.03	LandPlants
Solyc12g062550.1.1	No alias	Ribulose bisphosphate carboxylase large chain OS=Solanum...	0.05	LandPlants
Zm00001e002755_P001	No alias	Ribulose bisphosphate carboxylase large chain OS=Zea...	0.07	LandPlants
Zm00001e010393_P001	No alias	no hits & (original description: none)	0.04	LandPlants
Zm00001e031080_P001	No alias	Ribulose bisphosphate carboxylase large chain OS=Zea...	0.21	LandPlants
Zm00001e042029_P001	No alias	large subunit of ribulose-1,5-bisphosphat...	0.23	LandPlants
Zm00001e042051_P001	No alias	large subunit of ribulose-1,5-bisphosphat...	0.25	LandPlants
Zm00001e042083_P001	No alias	large subunit of ribulose-1,5-bisphosphat...	0.27	LandPlants
Zm00001e042095_P001	No alias	large subunit of ribulose-1,5-bisphosphat...	0.27	LandPlants
Zm00001e042351_P001	No alias	no hits & (original description: none)	0.13	LandPlants
Zm00001e042403_P001	No alias	large subunit of ribulose-1,5-bisphosphat...	0.27	LandPlants
Zm00001e042465_P001	No alias	Ribulose bisphosphate carboxylase large chain OS=Zea...	0.05	LandPlants
AMTR_s00001p00272640	evm_27.TU.AmTr_v1...	Ribulose bisphosphate carboxylase large chain OS=Nymphaea alba	0.12	SeedPlants
AMTR_s00012p00184400	evm_27.TU.AmTr_v1...	Ribulose bisphosphate carboxylase large chain...	0.12	SeedPlants
AMTR_s00606p00006850	evm_27.TU.AmTr_v1...	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.12	SeedPlants
ATCG00490	RBCL	ribulose-bisphosphate carboxylases	0.37	SeedPlants
GSVIVT01013856001	No alias	Ribulose bisphosphate carboxylase large chain (Fragment)...	0.09	SeedPlants
GSVIVT01022403001	No alias	Ribulose bisphosphate carboxylase large chain OS=Sesbania sesban	0.09	SeedPlants
Gb_07644	No alias	Ribulose bisphosphate carboxylase large chain...	0.16	SeedPlants
Gb_15502	No alias	Ribulose bisphosphate carboxylase large chain...	0.16	SeedPlants
Gb_18620	No alias	Ribulose bisphosphate carboxylase large chain...	0.05	SeedPlants
Gb_34523	No alias	Ribulose bisphosphate carboxylase large chain (Fragment)...	0.17	SeedPlants
Gb_37464	No alias	Ribulose bisphosphate carboxylase large chain...	0.16	SeedPlants
MA_103636g0010	No alias	Ribulose bisphosphate carboxylase large chain...	0.02	SeedPlants
Solyc00g500063.1.1	No alias	large subunit of ribulose-1,5-bisphosphat...	0.35	SeedPlants
Solyc12g062550.1.1	No alias	Ribulose bisphosphate carboxylase large chain OS=Solanum...	0.05	SeedPlants
Zm00001e002755_P001	No alias	Ribulose bisphosphate carboxylase large chain OS=Zea...	0.06	SeedPlants
Zm00001e010393_P001	No alias	no hits & (original description: none)	0.04	SeedPlants
Zm00001e031080_P001	No alias	Ribulose bisphosphate carboxylase large chain OS=Zea...	0.22	SeedPlants
Zm00001e042029_P001	No alias	large subunit of ribulose-1,5-bisphosphat...	0.24	SeedPlants
Zm00001e042051_P001	No alias	large subunit of ribulose-1,5-bisphosphat...	0.26	SeedPlants
Zm00001e042083_P001	No alias	large subunit of ribulose-1,5-bisphosphat...	0.27	SeedPlants
Zm00001e042095_P001	No alias	large subunit of ribulose-1,5-bisphosphat...	0.28	SeedPlants
Zm00001e042351_P001	No alias	no hits & (original description: none)	0.12	SeedPlants
Zm00001e042403_P001	No alias	large subunit of ribulose-1,5-bisphosphat...	0.28	SeedPlants
Zm00001e042465_P001	No alias	Ribulose bisphosphate carboxylase large chain OS=Zea...	0.05	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015977	carbon fixation	IEA	Interproscan
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	None	Extended
MF	GO:0016984	ribulose-bisphosphate carboxylase activity	IEA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR017443	RuBisCO_lsu_fd_N	24	144
IPR000685	RuBisCO_lsu_C	154	250
IPR000685	RuBisCO_lsu_C	280	326
IPR000589	Ribosomal_S15	418	489

External Links

No external refs found!

LOC_Os12g10580.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation