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  5. Ppi_g47240

Ppi_g47240 (ATMBD6, MBD6)


Aliases : ATMBD6, MBD6

Description : methylation reader *(MBD5-6) & original description: none


Gene families : OG0000559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000559_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g47240

Target Alias Description ECC score Gene Family Method Actions
Adi_g008918 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g061124 MBD05, MBD5, ATMBD5 methylation reader *(MBD5-6) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g081598 No alias methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g110319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10364 No alias methylation reader *(MBD5-6) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.21G081800.1 ATMBD6, MBD6,... methylation reader *(MBD5-6) & original description:... 0.03 OrthoFinder output from all 47 species
Dde_g25548 MBD05, MBD5, ATMBD5 methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01025031001 ATMBD7, MBD7 Chromatin organisation.DNA methylation.ROS1-mediated DNA... 0.02 OrthoFinder output from all 47 species
Mp2g13260.1 MBD05, MBD5, ATMBD5 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g09963 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07671 No alias methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR001739 Methyl_CpG_DNA-bd 353 412
No external refs found!