LOC_Os12g06890.1


Description : NUP98 nucleoporin of nuclear pore complex


Gene families : OG_01_0001288 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001288_tree ,
OG_02_0003828 (LandPlants) Phylogenetic Tree(s): OG_02_0003828_tree ,
OG_03_0003888 (SeedPlants) Phylogenetic Tree(s): OG_03_0003888_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g06890.1
Cluster HCCA: Cluster_376

Target Alias Description ECC score Gene Family Method Actions
Cre02.g086887 No alias Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_29033 No alias NUP96 scaffold nucleoporin of nuclear pore complex 0.02 Archaeplastida
MA_10434126g0020 No alias NUP96 scaffold nucleoporin of nuclear pore complex 0.03 Archaeplastida
MA_62342g0010 No alias NUP98 nucleoporin of nuclear pore complex 0.03 Archaeplastida
Solyc04g007280.3.1 No alias NUP98 nucleoporin of nuclear pore complex 0.07 Archaeplastida
Zm00001e020801_P003 No alias NUP98 nucleoporin of nuclear pore complex 0.03 Archaeplastida
Zm00001e038897_P001 No alias NUP96 scaffold nucleoporin of nuclear pore complex 0.02 Archaeplastida
MA_62342g0010 No alias NUP98 nucleoporin of nuclear pore complex 0.02 LandPlants
Solyc04g007280.3.1 No alias NUP98 nucleoporin of nuclear pore complex 0.06 LandPlants
Zm00001e020801_P003 No alias NUP98 nucleoporin of nuclear pore complex 0.03 LandPlants
Solyc04g007280.3.1 No alias NUP98 nucleoporin of nuclear pore complex 0.05 SeedPlants
Zm00001e020801_P003 No alias NUP98 nucleoporin of nuclear pore complex 0.02 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
BP GO:0006913 nucleocytoplasmic transport IEA Interproscan
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007230 Peptidase_S59 782 928
No external refs found!