LOC_Os12g06890.1

Description : NUP98 nucleoporin of nuclear pore complex

Gene families : OG_01_0001288 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001288_tree ,
OG_02_0003828 (LandPlants) Phylogenetic Tree(s): OG_02_0003828_tree ,
OG_03_0003888 (SeedPlants) Phylogenetic Tree(s): OG_03_0003888_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os12g06890.1
Cluster	HCCA: Cluster_376

Target	Alias	Description	ECC score	Gene Family Method
Cre02.g086887	No alias	Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana	0.02	Archaeplastida
Gb_29033	No alias	NUP96 scaffold nucleoporin of nuclear pore complex	0.02	Archaeplastida
MA_10434126g0020	No alias	NUP96 scaffold nucleoporin of nuclear pore complex	0.03	Archaeplastida
MA_62342g0010	No alias	NUP98 nucleoporin of nuclear pore complex	0.03	Archaeplastida
Solyc04g007280.3.1	No alias	NUP98 nucleoporin of nuclear pore complex	0.07	Archaeplastida
Zm00001e020801_P003	No alias	NUP98 nucleoporin of nuclear pore complex	0.03	Archaeplastida
Zm00001e038897_P001	No alias	NUP96 scaffold nucleoporin of nuclear pore complex	0.02	Archaeplastida
MA_62342g0010	No alias	NUP98 nucleoporin of nuclear pore complex	0.02	LandPlants
Solyc04g007280.3.1	No alias	NUP98 nucleoporin of nuclear pore complex	0.06	LandPlants
Zm00001e020801_P003	No alias	NUP98 nucleoporin of nuclear pore complex	0.03	LandPlants
Solyc04g007280.3.1	No alias	NUP98 nucleoporin of nuclear pore complex	0.05	SeedPlants
Zm00001e020801_P003	No alias	NUP98 nucleoporin of nuclear pore complex	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005643	nuclear pore	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017056	structural constituent of nuclear pore	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007230	Peptidase_S59	782	928

External Links

No external refs found!