LOC_Os12g06630.2


Description : transcription factor (TUB)


Gene families : OG_01_0000335 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000335_tree ,
OG_02_0000295 (LandPlants) Phylogenetic Tree(s): OG_02_0000295_tree ,
OG_03_0000341 (SeedPlants) Phylogenetic Tree(s): OG_03_0000341_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g06630.2
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00040910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
AMTR_s00057p00153680 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
Cre12.g520650 No alias RNA biosynthesis.transcriptional activation.TUB... 0.01 Archaeplastida
GSVIVT01029701001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.05 Archaeplastida
Gb_22686 No alias transcription factor (TUB) 0.02 Archaeplastida
LOC_Os01g48370.1 No alias transcription factor (TUB) 0.04 Archaeplastida
LOC_Os08g01290.5 No alias transcription factor (TUB) 0.03 Archaeplastida
MA_103920g0010 No alias transcription factor (TUB) 0.04 Archaeplastida
MA_18086g0010 No alias transcription factor (TUB) 0.05 Archaeplastida
MA_7878406g0010 No alias No annotation 0.02 Archaeplastida
Pp3c20_2160V3.1 No alias tubby like protein 3 0.03 Archaeplastida
Pp3c20_2190V3.1 No alias tubby like protein 3 0.03 Archaeplastida
Smo85745 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
Zm00001e023326_P001 No alias transcription factor (TUB) 0.02 Archaeplastida
AMTR_s00057p00153680 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.02 LandPlants
AT2G47900 AtTLP3, TLP3 tubby like protein 3 0.02 LandPlants
GSVIVT01029701001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 LandPlants
MA_132704g0010 No alias transcription factor (TUB) 0.02 LandPlants
Pp3c20_2160V3.1 No alias tubby like protein 3 0.03 LandPlants
Pp3c20_2190V3.1 No alias tubby like protein 3 0.03 LandPlants
Pp3c23_17770V3.1 No alias tubby like protein 3 0.01 LandPlants
Smo85745 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 LandPlants
Solyc01g104670.3.1 No alias transcription factor (TUB) 0.03 LandPlants
GSVIVT01029701001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 SeedPlants
Gb_21935 No alias transcription factor (TUB) 0.02 SeedPlants
MA_132704g0010 No alias transcription factor (TUB) 0.02 SeedPlants
Solyc04g071440.3.1 No alias transcription factor (TUB) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001810 F-box_dom 58 111
IPR000007 Tubby_C 122 440
No external refs found!