Zm00001d031858 (GRMZM2G165011)

Aliases : GRMZM2G165011

Description : 27.3.69 RNA.regulation of transcription.SET-domain transcriptional regulator family Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation. SU(VAR)3-9 homolog 9 (SUVH9)

Gene families : OG_01_0000166 (Gene family) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d031858
Cluster HCCA cluster: Cluster_333

Target Alias Description ECC score Gene Family Method Actions
AT2G22740 SDG23, SUVH6 SU(VAR)3-9 homolog 6 0.02 Gene family
LOC_Os08g45130 Os08g0565700 27.3.69 RNA.regulation of transcription.SET-domain... 0.04 Gene family
Solyc10g077070.2.1 Solyc10g077070.2 27.3.69 RNA.regulation of transcription.SET-domain... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007728 Pre-SET_dom 395 492
IPR001214 SET_dom 511 644
IPR003105 SRA_YDG 209 362
No external refs found!