LOC_Os12g03540.1


Description : ALADIN scaffold nucleoporin of nuclear pore complex


Gene families : OG_01_0004325 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004325_tree ,
OG_02_0004827 (LandPlants) Phylogenetic Tree(s): OG_02_0004827_tree ,
OG_03_0005573 (SeedPlants) Phylogenetic Tree(s): OG_03_0005573_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g03540.1
Cluster HCCA: Cluster_353

Target Alias Description ECC score Gene Family Method Actions
Mp5g23340.1 No alias ALADIN scaffold nucleoporin of nuclear pore complex 0.05 Archaeplastida
Pp3c11_18220V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Archaeplastida
Solyc08g016801.1.1 No alias ALADIN scaffold nucleoporin of nuclear pore complex 0.03 Archaeplastida
Solyc08g036600.3.1 No alias ALADIN scaffold nucleoporin of nuclear pore complex 0.04 Archaeplastida
Zm00001e039214_P001 No alias ALADIN scaffold nucleoporin of nuclear pore complex 0.06 Archaeplastida
Mp5g23340.1 No alias ALADIN scaffold nucleoporin of nuclear pore complex 0.05 LandPlants
Pp3c11_18220V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.02 LandPlants
Solyc08g016801.1.1 No alias ALADIN scaffold nucleoporin of nuclear pore complex 0.03 LandPlants
Solyc08g036600.3.1 No alias ALADIN scaffold nucleoporin of nuclear pore complex 0.04 LandPlants
Zm00001e039214_P001 No alias ALADIN scaffold nucleoporin of nuclear pore complex 0.05 LandPlants
Gb_13199 No alias ALADIN scaffold nucleoporin of nuclear pore complex 0.01 SeedPlants
Solyc08g016801.1.1 No alias ALADIN scaffold nucleoporin of nuclear pore complex 0.03 SeedPlants
Solyc08g036600.3.1 No alias ALADIN scaffold nucleoporin of nuclear pore complex 0.04 SeedPlants
Zm00001e039214_P001 No alias ALADIN scaffold nucleoporin of nuclear pore complex 0.05 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR024977 Apc4_WD40_dom 105 180
IPR001680 WD40_repeat 261 282
IPR001680 WD40_repeat 205 242
No external refs found!