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  5. Ppi_g43098

Ppi_g43098 (emb1138)


Aliases : emb1138

Description : group-II intron splicing RNA helicase *(RH3) & original description: none


Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g43098
Cluster HCCA: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00168720 emb1138,... RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
AMTR_s00126p00110160 PMH2, ATRH53,... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AT5G26742 emb1138 DEAD box RNA helicase (RH3) 0.03 OrthoFinder output from all 47 species
Adi_g055950 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055951 emb1138 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g079817 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Adi_g086708 emb1138 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22353 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Als_g07437 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Als_g26679 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Aob_g15554 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Aop_g04482 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0027.g023578 emb1138 not classified & original description: CDS=239-2545 0.02 OrthoFinder output from all 47 species
Azfi_s0166.g054407 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Cba_g11616 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Cre17.g727700 emb1138 DEAD-box ATP-dependent RNA helicase 3, chloroplastic... 0.02 OrthoFinder output from all 47 species
Dac_g12671 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Dde_g04423 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01031360001 emb1138 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
Gb_04849 emb1138 RH3 plastidial RNA basal splicing factor 0.02 OrthoFinder output from all 47 species
LOC_Os03g61220.1 emb1138, LOC_Os03g61220 RH3 plastidial RNA basal splicing factor 0.03 OrthoFinder output from all 47 species
Len_g12708 emb1138 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g23119 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g38604 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g07724 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Msp_g22012 emb1138 sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.03 OrthoFinder output from all 47 species
Nbi_g06285 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Ore_g29256 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.06 OrthoFinder output from all 47 species
Pir_g19704 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Pp3c10_2520V3.1 Pp3c10_2520 No annotation 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015897 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016750 PRH75 not classified & original description: CDS=177-2189 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017215 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0230.g026421 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Sam_g06711 No alias group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Spa_g17328 emb1138 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07132 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e003219_P001 PMH2, ATRH53,... RNA helicase (PMH) 0.02 OrthoFinder output from all 47 species
Zm00001e006243_P001 emb1138, Zm00001e006243 RH3 plastidial RNA basal splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 366 474
IPR012562 GUCT 561 661
IPR011545 DEAD/DEAH_box_helicase_dom 158 328
IPR001878 Znf_CCHC 738 753
No external refs found!