1. Home
  2. Species
  3. Pyrrosia piloselloides
  4. Sequence
  5. Ppi_g42834

Ppi_g42834


Description : component *(ACINUS) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0001433 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001433_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g42834

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00067890 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
AT4G39680 No alias SAP domain-containing protein 0.04 OrthoFinder output from all 47 species
Aev_g07965 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ala_g16232 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Als_g06643 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Als_g12459 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Als_g27768 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Als_g39202 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g07390 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Aop_g14212 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aop_g68608 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Cba_g39106 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Cba_g39107 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Dcu_g09840 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Dcu_g39092 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Dde_g25731 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Ehy_g19978 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
GSVIVT01008977001 No alias RNA processing.RNA quality control Exon Junction complex... 0.04 OrthoFinder output from all 47 species
LOC_Os03g26630.1 LOC_Os03g26630 component ACINUS of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
MA_7197g0010 No alias component ACINUS of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
Mp2g15000.1 No alias component ACINUS of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Msp_g25304 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.06 OrthoFinder output from all 47 species
Msp_g44218 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ore_g30531 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ore_g42805 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Pir_g04495 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Pir_g08467 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Pir_g57721 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Sam_g37080 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Solyc04g072670.4.1 Solyc04g072670 component ACINUS of RNA quality control Exon Junction complex 0.05 OrthoFinder output from all 47 species
Spa_g12594 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Tin_g05227 No alias component *(ACINUS) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Zm00001e001848_P001 Zm00001e001848 component ACINUS of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Zm00001e037964_P002 Zm00001e037964 component ACINUS of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR032552 RSB_motif 874 923
IPR003034 SAP_dom 13 46
No external refs found!