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  5. Ppi_g42460

Ppi_g42460


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g42460

Target Alias Description ECC score Gene Family Method Actions
AT4G30400 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Aev_g24713 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03042 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g11862 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene22524.t1 Aspi01Gene22524 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene37206.t1 Aspi01Gene37206 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene45023.t1 Aspi01Gene45023 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Azfi_s0351.g066574 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ceric.21G001100.1 ATL2, TL2,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Cre01.g000700 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Dac_g11681 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Dac_g28799 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Dcu_g06219 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Dcu_g08579 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Dde_g35132 ATL3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04602 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Gb_04644 ATL2, TL2 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Gb_04645 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Gb_08038 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os02g08200.1 RHA3B, LOC_Os02g08200 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os08g06090.1 RHA3B, LOC_Os08g06090 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os09g38110.1 LOC_Os09g38110 RING-H2 finger protein ATL80 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os12g42540.1 LOC_Os12g42540 RING-H2 finger protein ATL70 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp4g04600.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g04641 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04383 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ppi_g09527 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0158.g023798 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sam_g04638 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35234 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Solyc01g088440.2.1 Solyc01g088440 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Solyc05g008640.1.1 RHA2A, Solyc05g008640 RHA2 signal transducer of abscisic acid perception 0.05 OrthoFinder output from all 47 species
Solyc06g064440.3.1 Solyc06g064440 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Spa_g11356 XERICO E3 ubiquitin ligase *(BRH) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g29875 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Zm00001e015470_P001 ATL8, Zm00001e015470 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e038107_P001 Zm00001e038107 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0016020 membrane IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 112 155
No external refs found!