Zm00001d031457


Description : 27.2 RNA.transcription Encodes one of two alternative largest subunits of a putative plant-specific RNA polymerase IV (aka RNA polymerase D). Required for posttranscriptional gene silencing. nuclear RNA polymerase D1A (NRPD1A)


Gene families : OG_01_0006696 (Gene family) Phylogenetic Tree(s): OG0006696_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d031457
Cluster HCCA cluster: Cluster_286

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01019869001 No alias 27.2 RNA.transcription Encodes one of two alternative... 0.03 Gene family
Solyc08g080220.2.1 Solyc08g080220.2 27.2 RNA.transcription Encodes one of two alternative... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan
BP GO:0006351 transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007066 RNA_pol_Rpb1_3 495 644
IPR007081 RNA_pol_Rpb1_5 815 899
IPR000722 RNA_pol_asu 334 491
IPR007083 RNA_pol_Rpb1_4 709 772
IPR007080 RNA_pol_Rpb1_1 39 282
No external refs found!