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  5. Ppi_g41466

Ppi_g41466


Description : E3 ubiquitin ligase *(RMA/MUSE) & original description: none


Gene families : OG0000266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000266_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g41466
Cluster HCCA: Cluster_239

Target Alias Description ECC score Gene Family Method Actions
Adi_g008787 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g09554 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16158 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0159.g053943 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: CDS=1-882 0.02 OrthoFinder output from all 47 species
Dac_g36010 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01031912001 No alias No description available 0.02 OrthoFinder output from all 47 species
Nbi_g22217 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003329_P001 Zm00001e003329 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e026195_P001 Zm00001e026195 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 35 77
No external refs found!