LOC_Os11g48090.5

Description : component MED34 of MEDIATOR transcription co-activator complex

Gene families : OG_01_0000499 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000499_tree ,
OG_02_0008914 (LandPlants) Phylogenetic Tree(s): OG_02_0008914_tree ,
OG_03_0010564 (SeedPlants) Phylogenetic Tree(s): OG_03_0010564_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os11g48090.5
Cluster	HCCA: Cluster_347

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00048p00224070	evm_27.TU.AmTr_v1...	RNA biosynthesis.RNA polymerase II-dependent...	0.02	Archaeplastida
GSVIVT01031213001	No alias	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana	0.04	Archaeplastida
MA_10429752g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Mp2g02390.1	No alias	Mediator of RNA polymerase II transcription subunit 34...	0.03	Archaeplastida
Pp3c5_19440V3.1	No alias	RECQ helicase L2	0.02	Archaeplastida
Zm00001e002693_P002	No alias	component MED34 of MEDIATOR transcription co-activator complex	0.03	Archaeplastida
Zm00001e016051_P001	No alias	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis...	0.04	Archaeplastida
AMTR_s00048p00224070	evm_27.TU.AmTr_v1...	RNA biosynthesis.RNA polymerase II-dependent...	0.02	LandPlants
Zm00001e002693_P002	No alias	component MED34 of MEDIATOR transcription co-activator complex	0.03	LandPlants
AMTR_s00048p00224070	evm_27.TU.AmTr_v1...	RNA biosynthesis.RNA polymerase II-dependent...	0.02	SeedPlants
Zm00001e002693_P002	No alias	component MED34 of MEDIATOR transcription co-activator complex	0.03	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	92	259
IPR001650	Helicase_C	305	407
IPR032284	RecQ_Zn-bd	420	475
IPR002121	HRDC_dom	609	669

External Links

No external refs found!