Ppi_g40466 (TAF4, TAF4B)

Aliases : TAF4, TAF4B

Description : component *(TAF4) of TFIId basal transcription regulation complex & original description: none

Gene families : OG0002362 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002362_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g40466

Target	Alias	Description	ECC score	Gene Family Method
Aob_g42043	TAF4, TAF4B	component *(TAF4) of TFIId basal transcription...	0.03	OrthoFinder output from all 47 species
Dac_g17796	TAF4, TAF4B	component *(TAF4) of TFIId basal transcription...	0.04	OrthoFinder output from all 47 species
Dde_g15387	TAF4, TAF4B	component *(TAF4) of TFIId basal transcription...	0.03	OrthoFinder output from all 47 species
GSVIVT01009365001	TAF4, TAF4B	RNA biosynthesis.RNA polymerase II-dependent...	0.02	OrthoFinder output from all 47 species
Gb_41115	TAF4, TAF4B	component TAF4 of TFIId basal transcription regulation complex	0.02	OrthoFinder output from all 47 species
Lfl_g32571	TAF4, TAF4B	component *(TAF4) of TFIId basal transcription...	0.03	OrthoFinder output from all 47 species
Mp2g09230.1	TAF4, TAF4B	component TAF4 of TFIId basal transcription regulation complex	0.01	OrthoFinder output from all 47 species
Zm00001e002074_P001	TAF4, TAF4B,...	component TAF4 of TFIId basal transcription regulation complex	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	None	Extended
CC	GO:0005669	transcription factor TFIID complex	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005875	microtubule associated complex	IEP	HCCA
BP	GO:0006072	glycerol-3-phosphate metabolic process	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
CC	GO:0030286	dynein complex	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0046168	glycerol-3-phosphate catabolic process	IEP	HCCA
BP	GO:0046434	organophosphate catabolic process	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
BP	GO:0052646	alditol phosphate metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022003	RST	36	97
IPR007900	TAF4_C	334	555

External Links

No external refs found!

Ppi_g40466 (TAF4, TAF4B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation